protocols::scoring::methods::pcs2::PcsEnergy Member List

This is the complete list of members for protocols::scoring::methods::pcs2::PcsEnergy, including all inherited members.

atomic_interaction_cutoff() const	core::scoring::methods::WholeStructureEnergy	inlinevirtual
CA_search_scores_and_tensors(utility::vector1< core::Real > &vec_best_score, utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, core::pose::Pose const &pdb, PcsDataCenter &pcs_d, core::Size i_multi_data, GridSearchIteratorCA &grid_it) const	protocols::scoring::methods::pcs2::PcsEnergy
CA_search_scores_and_tensors_with_svd(utility::vector1< core::Real > &vec_best_score, utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, core::pose::Pose const &, PcsDataCenter &pcs_d_c, core::Size, GridSearchIteratorCA &grid_it) const	protocols::scoring::methods::pcs2::PcsEnergy
calculate_pcs_score_on_PCS_data_center_CA(core::pose::Pose &pose, bool print_to_tracer, PcsDataCenter &pcs_d, core::Size i_multi_data, GridSearchIteratorCA &grid_it) const	protocols::scoring::methods::pcs2::PcsEnergy
clone() const override	protocols::scoring::methods::pcs2::PcsEnergy	virtual
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
dump_PCS_info(utility::vector1< PcsTensor > const &vec_tensor, numeric::xyzVector< core::Real > const &best_coo, PcsDataCenter const &pcs_d) const	protocols::scoring::methods::pcs2::PcsEnergy
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
finalize_after_minimizing(pose::Pose &pose) const	core::scoring::methods::EnergyMethod	virtual
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override	protocols::scoring::methods::pcs2::PcsEnergy	virtual
indicate_required_context_graphs(utility::vector1< bool > &) const override	protocols::scoring::methods::pcs2::PcsEnergy	virtual
method_type() const override	core::scoring::methods::WholeStructureEnergy	virtual
minimize_in_whole_structure_context(pose::Pose const &) const	core::scoring::methods::EnergyMethod	virtual
minimize_tensors_fix_from_PCS_data(utility::vector1< PcsTensor > &vec_best_tensor, PcsDataCenter const &pcs_d) const	protocols::scoring::methods::pcs2::PcsEnergy
minimize_tensors_from_PCS_data(utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, PcsDataCenter const &pcs_d, core::optimization::Minimizer &minimizer, utility::vector1< core::Real > &vect_to_opti) const	protocols::scoring::methods::pcs2::PcsEnergy
minimize_tensors_from_PCS_data_with_svd(utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, PcsDataCenter const &, core::optimization::Minimizer &minimizer, utility::vector1< core::Real > &vect_to_opti) const	protocols::scoring::methods::pcs2::PcsEnergy
operator=(PcsEnergy const &other)	protocols::scoring::methods::pcs2::PcsEnergy
parent typedef	protocols::scoring::methods::pcs2::PcsEnergy
PCS_multi_data_from_noone() const	protocols::scoring::methods::pcs2::PcsEnergy
PCS_multi_data_from_pose(core::pose::Pose &pose) const	protocols::scoring::methods::pcs2::PcsEnergy
PcsEnergy()	protocols::scoring::methods::pcs2::PcsEnergy
PcsEnergy(PcsEnergy const &other)	protocols::scoring::methods::pcs2::PcsEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const	core::scoring::methods::EnergyMethod	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::scoring::methods::EnergyMethod	virtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const	core::scoring::methods::EnergyMethod	virtual
score_types() const	core::scoring::methods::EnergyMethod	inline
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	protected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	virtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const	core::scoring::methods::EnergyMethod	virtual
show_additional_info(std::ostream &, pose::Pose &, bool) const	core::scoring::methods::EnergyMethod	virtual
update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	virtual
version() const override	protocols::scoring::methods::pcs2::PcsEnergy	virtual
WholeStructureEnergy(EnergyMethodCreatorOP)	core::scoring::methods::WholeStructureEnergy
~PcsEnergy() override	protocols::scoring::methods::pcs2::PcsEnergy
~WholeStructureEnergy() override	core::scoring::methods::WholeStructureEnergy	inline