protocols::abinitio::Protocol Member List

This is the complete list of members for protocols::abinitio::Protocol, including all inherited members.

add_evaluation(evaluation::PoseEvaluatorOP ev)	protocols::abinitio::Protocol
apply(core::pose::Pose &) override	protocols::abinitio::Protocol	virtual
BaseClass typedef	protocols::abinitio::Protocol
centroid_scorefxn()	protocols::abinitio::Protocol	inline
checkpoints_	protocols::abinitio::Protocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
evaluate_pose(core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &pss) const	protocols::abinitio::Protocol
evaluator()	protocols::abinitio::Protocol	inline
evaluator_	protocols::abinitio::Protocol	private
fresh_instance() const	protocols::moves::Mover	virtual
fullatom_scorefxn()	protocols::abinitio::Protocol	inline
get_additional_output()	protocols::moves::Mover	virtual
get_checkpoints()	protocols::abinitio::Protocol	inlinevirtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::abinitio::Protocol	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init(core::pose::Pose const &)	protocols::abinitio::Protocol	inlinevirtual
kinematic_control_	protocols::abinitio::Protocol	private
kinematics()	protocols::abinitio::Protocol	inline
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
output_debug_structure(core::pose::Pose &pose, std::string prefix)	protocols::abinitio::Protocol	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
Protocol()	protocols::abinitio::Protocol
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
register_options()	protocols::abinitio::Protocol	static
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
return_centroid() const	protocols::abinitio::Protocol	inlinevirtual
return_centroid(bool setting)	protocols::abinitio::Protocol	inlinevirtual
return_centroid_	protocols::abinitio::Protocol	private
scorefxn_centroid_	protocols::abinitio::Protocol	private
scorefxn_fa_	protocols::abinitio::Protocol	private
set_centroid_scorefxn(core::scoring::ScoreFunctionOP sfxn)	protocols::abinitio::Protocol	inline
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_evaluation(evaluation::MetaPoseEvaluatorOP ev)	protocols::abinitio::Protocol
set_fullatom_scorefxn(core::scoring::ScoreFunctionOP sfxn)	protocols::abinitio::Protocol	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_kinematics(abinitio::KinematicControlOP kc)	protocols::abinitio::Protocol	inline
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_silentout_file_name(std::string str)	protocols::abinitio::Protocol	inline
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_use_trRosetta_constraints(bool const setting)	protocols::abinitio::Protocol
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
silentout_file_name_	protocols::abinitio::Protocol	private
start_from_centroid() const	protocols::abinitio::Protocol	inlinevirtual
Strings typedef	protocols::moves::Mover
supports_trRosetta_constraints() const	protocols::abinitio::Protocol	virtual
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_trRosetta_constraints() const	protocols::abinitio::Protocol	inline
use_trRosetta_constraints_	protocols::abinitio::Protocol	private
~Protocol() override=default	protocols::abinitio::Protocol