protocols::calc_taskop_filters::MultipleSigmoids Class Reference

simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product) More...

#include <MultipleSigmoidsFilter.hh>

Inheritance diagram for protocols::calc_taskop_filters::MultipleSigmoids:

Public Member Functions
	MultipleSigmoids ()
	~MultipleSigmoids () override
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
core::Real	compute (core::pose::Pose const &pose) const
core::Real	threshold () const
void	threshold (core::Real const t)
OperatorOP	operator_filter () const
void	operator_filter (OperatorOP opt)
SigmoidOP	sigmoid_filter () const
RelativePoseFilterOP	relative_pose_filter () const
void	relative_pose_filter (RelativePoseFilterOP rpose)
void	reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint)
std::string	name () const override
	allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
std::string	file_names_
core::Real	threshold_
RelativePoseFilterOP	r_pose_
SigmoidOP	sig_
OperatorOP	operatorF_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product)

Constructor & Destructor Documentation

protocols::calc_taskop_filters::MultipleSigmoids::MultipleSigmoids

(

)

protocols::calc_taskop_filters::MultipleSigmoids::~MultipleSigmoids ( )

overridedefault

Member Function Documentation

bool protocols::calc_taskop_filters::MultipleSigmoids::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), threshold(), and protocols::hybridization::val.

std::string protocols::calc_taskop_filters::MultipleSigmoids::class_name ( )

static

Referenced by protocols::calc_taskop_filters::MultipleSigmoidsFilterCreator::keyname(), name(), and provide_xml_schema().

protocols::filters::FilterOP protocols::calc_taskop_filters::MultipleSigmoids::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

core::Real protocols::calc_taskop_filters::MultipleSigmoids::compute

(

core::pose::Pose const &

pose

)

const

References operatorF_, protocols::calc_taskop_filters::TR(), and protocols::hybridization::val.

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::calc_taskop_filters::MultipleSigmoids::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::calc_taskop_filters::MultipleSigmoids::name ( ) const

overridevirtual

allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise

Reimplemented from protocols::filters::Filter.

References class_name().

OperatorOP protocols::calc_taskop_filters::MultipleSigmoids::operator_filter

(

)

const

References operatorF_.

void protocols::calc_taskop_filters::MultipleSigmoids::operator_filter

(

OperatorOP

opt

)

References operatorF_.

void protocols::calc_taskop_filters::MultipleSigmoids::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References operatorF_, r_pose_, sig_, threshold(), and protocols::calc_taskop_filters::TR().

void protocols::calc_taskop_filters::MultipleSigmoids::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::calc_taskop_filters::Sigmoid::attributes(), protocols::calc_taskop_filters::Operator::attributes(), protocols::calc_taskop_filters::RelativePoseFilter::attributes(), class_name(), protocols::calc_taskop_filters::subtag_for_multiple_sigmoids(), and protocols::filters::xsd_type_definition_w_attributes_and_repeatable_subelements().

Referenced by protocols::calc_taskop_filters::MultipleSigmoidsFilterCreator::provide_xml_schema().

RelativePoseFilterOP protocols::calc_taskop_filters::MultipleSigmoids::relative_pose_filter

(

)

const

References r_pose_.

void protocols::calc_taskop_filters::MultipleSigmoids::relative_pose_filter

(

RelativePoseFilterOP

rpose

)

References r_pose_.

void protocols::calc_taskop_filters::MultipleSigmoids::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and protocols::hybridization::val.

core::Real protocols::calc_taskop_filters::MultipleSigmoids::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and operatorF_.

void protocols::calc_taskop_filters::MultipleSigmoids::reset_baseline	(	core::pose::Pose const &	pose,
		bool const	attempt_read_from_checkpoint
	)

References operatorF_, and protocols::calc_taskop_filters::TR().

SigmoidOP protocols::calc_taskop_filters::MultipleSigmoids::sigmoid_filter

(

)

const

References sig_.

core::Real protocols::calc_taskop_filters::MultipleSigmoids::threshold ( ) const

inline

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::calc_taskop_filters::MultipleSigmoids::threshold ( core::Real const  t )

inline

References protocols::hybridization::t, and threshold_.

Member Data Documentation

std::string protocols::calc_taskop_filters::MultipleSigmoids::file_names_

private

OperatorOP protocols::calc_taskop_filters::MultipleSigmoids::operatorF_

private

Referenced by compute(), operator_filter(), parse_my_tag(), report_sm(), and reset_baseline().

RelativePoseFilterOP protocols::calc_taskop_filters::MultipleSigmoids::r_pose_

private

Referenced by parse_my_tag(), and relative_pose_filter().

SigmoidOP protocols::calc_taskop_filters::MultipleSigmoids::sig_

private

Referenced by parse_my_tag(), and sigmoid_filter().

core::Real protocols::calc_taskop_filters::MultipleSigmoids::threshold_

private

Referenced by threshold().

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The documentation for this class was generated from the following files:

• src/protocols/calc_taskop_filters/MultipleSigmoidsFilter.hh
• src/protocols/calc_taskop_filters/MultipleSigmoidsFilter.cc