 |
Rosetta
2021.16
|
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
|
Rosetta
2021.16
|
Func is an abstract base class representing a function used to define constraints, in which func(r) gives the constraint score for the given value r. More...
#include <Func.hh>
Inherits VirtualBase.
Inherited by core::energy_methods::LK_SigmoidalFunc, core::scoring::constraints::BoundFunc, core::scoring::custom_pair_distance::DistanceFunc, core::scoring::disulfides::CaCbCb_Angle_Func, core::scoring::disulfides::CaCbCbCa_Dihedral_Func, core::scoring::disulfides::CB_Angle_Func, core::scoring::disulfides::Cb_Distance_Func, core::scoring::disulfides::CBSG_Dihedral_Func, core::scoring::disulfides::Cen_Distance_Func, core::scoring::disulfides::NCaCaC_Dihedral_Func, core::scoring::disulfides::SG_Dist_Func, core::scoring::disulfides::SGSG_Dihedral_Func, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::CircularGeneral1D_Func, core::scoring::func::CircularHarmonicFunc, core::scoring::func::CircularPowerFunc, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::ConstantFunc, core::scoring::func::CountViolFunc, core::scoring::func::EtableFunc, core::scoring::func::FadeFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::GaussianFunc, core::scoring::func::HarmonicFunc, core::scoring::func::IdentityFunc, core::scoring::func::KarplusFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::MixtureFunc, core::scoring::func::PeriodicFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::func::SigmoidFunc, core::scoring::func::SkipViolFunc, core::scoring::func::SmoothStepFunc, core::scoring::func::SoedingFunc, core::scoring::func::SOGFunc, core::scoring::func::SplineFunc, core::scoring::func::SquareWell2Func, core::scoring::func::SquareWellFunc, core::scoring::func::SumFunc, core::scoring::func::TopOutFunc, core::scoring::func::USOGFunc, and protocols::jumping::ChainbreakDistFunc.
Public Member Functions | |
| ~Func () override | |
| Automatically generated virtual destructor for class deriving directly from VirtualBase. More... | |
| virtual FuncOP | clone () const =0 |
| This method must return a deep copy of this Func, meaning if this Func holds pointers to other Func objects, that it must clone those Func objects as well. More... | |
| virtual bool | operator== (Func const &other) const =0 |
| Equality operator. Looks for strict equality. Floating-point comparison is the rule rather than the exception. More... | |
| bool | operator!= (Func const &other) const |
| inequality operator – simply the negation of the (virtual) equality operator More... | |
| virtual bool | same_type_as_me (Func const &other) const =0 |
| Does the input Func, "other", have the same type as me? Necessary for the equality operator to function correctly. All derived Func classes must implement this function. More... | |
| virtual void | read_data (std::istream &) |
| initialize this Func from the given std::istream. More... | |
| virtual Real | func (Real const ) const =0 |
| Returns a value representing this function evaluated at a given point. More... | |
| virtual Real | dfunc (Real const ) const =0 |
| Returns a value representing the derivative of this function evaluated at a given point. More... | |
| virtual Real | estimate_dfunc (Real const r) const |
| Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More... | |
| virtual Real | estimate_dfunc (Real const r, Real const h) const |
| Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More... | |
| virtual void | show (std::ostream &out) const |
| Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More... | |
| virtual void | show_definition (std::ostream &out) const |
| shows the definition of this function, usually the string type of function and the parameters passed in to the constructor. More... | |
| virtual Size | show_violations (std::ostream &out, Real r, Size verbose_level, Real threshold=1) const |
| show some sort of stringified representation of the violations for this constraint. More... | |
Func is an abstract base class representing a function used to define constraints, in which func(r) gives the constraint score for the given value r.
|
overridedefault |
Automatically generated virtual destructor for class deriving directly from VirtualBase.
Auto-generated virtual destructor
|
pure virtual |
This method must return a deep copy of this Func, meaning if this Func holds pointers to other Func objects, that it must clone those Func objects as well.
Implemented in core::scoring::disulfides::SG_Dist_Func, core::scoring::custom_pair_distance::DistanceFunc, core::scoring::disulfides::CB_Angle_Func, core::scoring::disulfides::CaCbCbCa_Dihedral_Func, core::scoring::disulfides::SGSG_Dihedral_Func, core::scoring::disulfides::NCaCaC_Dihedral_Func, core::scoring::disulfides::CaCbCb_Angle_Func, core::scoring::disulfides::CBSG_Dihedral_Func, core::scoring::disulfides::Cen_Distance_Func, core::scoring::disulfides::Cb_Distance_Func, core::scoring::constraints::OffsetPeriodicBoundFunc, core::scoring::constraints::PeriodicBoundFunc, core::energy_methods::LK_SigmoidalFunc, core::scoring::func::MixtureFunc, core::scoring::func::SplineFunc, core::scoring::func::FadeFunc, protocols::jumping::ChainbreakDistFunc, core::scoring::func::USOGFunc, core::scoring::func::EtableFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::SumFunc, core::scoring::func::CountViolFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::func::GaussianFunc, core::scoring::func::SOGFunc, core::scoring::func::SkipViolFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::ConstantFunc, core::scoring::func::SmoothStepFunc, core::scoring::constraints::BoundFunc, core::scoring::func::CircularGeneral1D_Func, core::scoring::func::CircularHarmonicFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::PeriodicFunc, core::scoring::func::SquareWell2Func, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::SquareWellFunc, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::KarplusFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::SoedingFunc, core::scoring::func::CircularPowerFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::SigmoidFunc, core::scoring::func::TopOutFunc, and core::scoring::func::IdentityFunc.
Referenced by core::scoring::constraints::AmbiguousNMRConstraint::remap_resid(), and core::scoring::constraints::NamedAtomPairConstraint::remapped_clone().
Returns a value representing the derivative of this function evaluated at a given point.
Implemented in core::scoring::disulfides::SG_Dist_Func, core::scoring::custom_pair_distance::DistanceFunc, core::scoring::disulfides::CB_Angle_Func, core::scoring::disulfides::CaCbCbCa_Dihedral_Func, core::scoring::disulfides::SGSG_Dihedral_Func, core::scoring::disulfides::NCaCaC_Dihedral_Func, core::scoring::disulfides::CBSG_Dihedral_Func, core::scoring::disulfides::CaCbCb_Angle_Func, core::scoring::disulfides::Cen_Distance_Func, core::scoring::disulfides::Cb_Distance_Func, core::scoring::constraints::OffsetPeriodicBoundFunc, core::scoring::func::SplineFunc, core::scoring::constraints::PeriodicBoundFunc, core::scoring::func::MixtureFunc, core::energy_methods::LK_SigmoidalFunc, core::scoring::func::FadeFunc, protocols::jumping::ChainbreakDistFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::EtableFunc, core::scoring::func::USOGFunc, core::scoring::func::GaussianFunc, core::scoring::func::SOGFunc, core::scoring::func::SumFunc, core::scoring::func::CountViolFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::constraints::BoundFunc, core::scoring::func::ConstantFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::SkipViolFunc, core::scoring::func::SmoothStepFunc, core::scoring::func::CircularGeneral1D_Func, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::SoedingFunc, core::scoring::func::CircularHarmonicFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::PeriodicFunc, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::SquareWell2Func, core::scoring::func::CircularPowerFunc, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::KarplusFunc, core::scoring::func::SquareWellFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::IdentityFunc, core::scoring::func::SigmoidFunc, and core::scoring::func::TopOutFunc.
Referenced by show().
Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05).
Referenced by show().
Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h).
References func().
Returns a value representing this function evaluated at a given point.
Implemented in core::scoring::disulfides::SG_Dist_Func, core::scoring::custom_pair_distance::DistanceFunc, core::scoring::disulfides::CB_Angle_Func, core::scoring::disulfides::CaCbCbCa_Dihedral_Func, core::scoring::disulfides::SGSG_Dihedral_Func, core::scoring::disulfides::NCaCaC_Dihedral_Func, core::scoring::disulfides::CaCbCb_Angle_Func, core::scoring::disulfides::CBSG_Dihedral_Func, core::scoring::disulfides::Cen_Distance_Func, core::scoring::disulfides::Cb_Distance_Func, core::scoring::constraints::OffsetPeriodicBoundFunc, core::scoring::func::SplineFunc, core::scoring::constraints::PeriodicBoundFunc, core::energy_methods::LK_SigmoidalFunc, core::scoring::func::MixtureFunc, core::scoring::func::FadeFunc, protocols::jumping::ChainbreakDistFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::EtableFunc, core::scoring::func::USOGFunc, core::scoring::func::SumFunc, core::scoring::func::CountViolFunc, core::scoring::func::GaussianFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::func::SOGFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::constraints::BoundFunc, core::scoring::func::ConstantFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::SkipViolFunc, core::scoring::func::SmoothStepFunc, core::scoring::func::CircularGeneral1D_Func, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::CircularHarmonicFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::PeriodicFunc, core::scoring::func::SoedingFunc, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::SquareWell2Func, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::KarplusFunc, core::scoring::func::SquareWellFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::CircularPowerFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::IdentityFunc, core::scoring::func::SigmoidFunc, and core::scoring::func::TopOutFunc.
Referenced by estimate_dfunc(), core::scoring::constraints::AmbiguousNMRConstraint::score(), protocols::sic_dock::ConstraintSetScore::score(), show(), and show_violations().
inequality operator – simply the negation of the (virtual) equality operator
Equality operator. Looks for strict equality. Floating-point comparison is the rule rather than the exception.
Implemented in core::scoring::custom_pair_distance::DistanceFunc, core::energy_methods::LK_SigmoidalFunc, core::scoring::func::MixtureFunc, core::scoring::func::SplineFunc, core::scoring::func::FadeFunc, protocols::jumping::ChainbreakDistFunc, core::scoring::func::EtableFunc, core::scoring::func::USOGFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::SumFunc, core::scoring::func::CountViolFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::func::GaussianFunc, core::scoring::func::SOGFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::SkipViolFunc, core::scoring::func::ConstantFunc, core::scoring::func::SmoothStepFunc, core::scoring::func::CircularGeneral1D_Func, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::CircularHarmonicFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::PeriodicFunc, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::SquareWell2Func, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::KarplusFunc, core::scoring::func::SquareWellFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::SoedingFunc, core::scoring::func::CircularPowerFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::IdentityFunc, core::scoring::func::SigmoidFunc, and core::scoring::func::TopOutFunc.
|
virtual |
initialize this Func from the given std::istream.
Reimplemented in core::scoring::constraints::OffsetPeriodicBoundFunc, core::scoring::func::MixtureFunc, core::scoring::func::SplineFunc, core::scoring::constraints::PeriodicBoundFunc, core::scoring::func::SOGFunc, core::scoring::func::GaussianFunc, core::scoring::func::EtableFunc, core::scoring::func::FadeFunc, core::scoring::func::USOGFunc, core::scoring::func::ConstantFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::SoedingFunc, core::scoring::func::SumFunc, core::scoring::func::CountViolFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::SkipViolFunc, core::scoring::func::SmoothStepFunc, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::CircularHarmonicFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::PeriodicFunc, core::scoring::constraints::BoundFunc, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::SquareWell2Func, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::KarplusFunc, core::scoring::func::SquareWellFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::IdentityFunc, core::scoring::func::SigmoidFunc, and core::scoring::func::TopOutFunc.
References core::scoring::func::tr().
Does the input Func, "other", have the same type as me? Necessary for the equality operator to function correctly. All derived Func classes must implement this function.
Implemented in core::scoring::custom_pair_distance::DistanceFunc, core::energy_methods::LK_SigmoidalFunc, core::scoring::func::MixtureFunc, core::scoring::func::SplineFunc, core::scoring::func::FadeFunc, protocols::jumping::ChainbreakDistFunc, core::scoring::func::EtableFunc, core::scoring::func::USOGFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::SumFunc, core::scoring::func::CountViolFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::func::GaussianFunc, core::scoring::func::SOGFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::SkipViolFunc, core::scoring::func::ConstantFunc, core::scoring::func::SmoothStepFunc, core::scoring::func::CircularGeneral1D_Func, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::CircularHarmonicFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::PeriodicFunc, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::SquareWell2Func, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::KarplusFunc, core::scoring::func::SquareWellFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::SoedingFunc, core::scoring::func::CircularPowerFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::IdentityFunc, core::scoring::func::SigmoidFunc, and core::scoring::func::TopOutFunc.
Referenced by core::scoring::func::IdentityFunc::operator==(), core::scoring::func::TopOutFunc::operator==(), core::scoring::func::SigmoidFunc::operator==(), core::scoring::func::FlatHarmonicFunc::operator==(), core::scoring::func::HarmonicFunc::operator==(), core::scoring::func::CircularPowerFunc::operator==(), core::scoring::func::SoedingFunc::operator==(), core::scoring::func::MinMultiHarmonicFunc::operator==(), core::scoring::func::SquareWellFunc::operator==(), core::scoring::func::GaussianChainSingleFunc::operator==(), core::scoring::func::KarplusFunc::operator==(), core::scoring::func::GaussianChainQuadrupleFunc::operator==(), core::scoring::func::SquareWell2Func::operator==(), core::scoring::func::LinearPenaltyFunction::operator==(), core::scoring::func::GaussianChainDoubleFunc::operator==(), core::scoring::func::CharmmPeriodicFunc::operator==(), core::scoring::func::GaussianChainTripleFunc::operator==(), core::scoring::func::PeriodicFunc::operator==(), core::scoring::func::AmberPeriodicFunc::operator==(), core::scoring::func::GaussianChainGeneralFunc::operator==(), core::scoring::func::CircularHarmonicFunc::operator==(), core::scoring::func::CircularSigmoidalFunc::operator==(), core::scoring::func::CircularGeneral1D_Func::operator==(), core::scoring::func::SmoothStepFunc::operator==(), core::scoring::func::ConstantFunc::operator==(), core::scoring::func::GaussianChainFunc::operator==(), core::scoring::func::SkipViolFunc::operator==(), core::scoring::func::GaussianFunc::operator==(), core::scoring::func::SOGFunc::operator==(), core::scoring::func::ScalarWeightedFunc::operator==(), core::scoring::func::CountViolFunc::operator==(), core::scoring::func::SumFunc::operator==(), core::scoring::func::CircularSplineFunc::operator==(), core::scoring::func::USOGFunc::operator==(), core::scoring::func::EtableFunc::operator==(), protocols::jumping::ChainbreakDistFunc::operator==(), core::scoring::func::FadeFunc::operator==(), core::scoring::func::SplineFunc::operator==(), core::scoring::func::MixtureFunc::operator==(), core::energy_methods::LK_SigmoidalFunc::operator==(), and core::scoring::custom_pair_distance::DistanceFunc::operator==().
|
virtual |
Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ).
Reimplemented in core::scoring::func::MixtureFunc.
References protocols::comparative_modeling::features::A, dfunc(), core::sequence::end, estimate_dfunc(), core::chemical::element::F, func(), core::chemical::element::I, and protocols::loops::start.
Referenced by core::scoring::func::operator<<().
|
virtual |
shows the definition of this function, usually the string type of function and the parameters passed in to the constructor.
Reimplemented in core::scoring::constraints::OffsetPeriodicBoundFunc, core::scoring::func::SplineFunc, core::scoring::constraints::PeriodicBoundFunc, core::scoring::func::MixtureFunc, core::scoring::func::FadeFunc, core::scoring::func::USOGFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::CountViolFunc, core::scoring::func::EtableFunc, core::scoring::func::SOGFunc, core::scoring::func::GaussianFunc, core::scoring::func::ScalarWeightedFunc, core::scoring::func::SkipViolFunc, core::scoring::func::GaussianChainGeneralFunc, core::scoring::constraints::BoundFunc, core::scoring::func::ConstantFunc, core::scoring::func::GaussianChainFunc, core::scoring::func::SmoothStepFunc, core::scoring::func::CircularSigmoidalFunc, core::scoring::func::SoedingFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::CircularHarmonicFunc, core::scoring::func::GaussianChainTripleFunc, core::scoring::func::PeriodicFunc, core::scoring::func::GaussianChainDoubleFunc, core::scoring::func::GaussianChainQuadrupleFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::SquareWell2Func, core::scoring::func::GaussianChainSingleFunc, core::scoring::func::SquareWellFunc, core::scoring::func::KarplusFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::SigmoidFunc, core::scoring::func::IdentityFunc, and core::scoring::func::TopOutFunc.
Referenced by core::scoring::constraints::NamedAtomPairConstraint::read_def(), and core::scoring::constraints::NamedAtomPairConstraint::show_def_nopose().
|
virtual |
show some sort of stringified representation of the violations for this constraint.
Reimplemented in core::scoring::constraints::OffsetPeriodicBoundFunc, core::scoring::func::SplineFunc, core::scoring::constraints::PeriodicBoundFunc, core::scoring::func::FadeFunc, core::scoring::func::FlatHarmonicFunc, core::scoring::func::CircularSplineFunc, core::scoring::func::MinMultiHarmonicFunc, core::scoring::func::HarmonicFunc, core::scoring::func::CountViolFunc, core::scoring::func::LinearPenaltyFunction, core::scoring::func::ScalarWeightedFunc, core::scoring::func::SquareWell2Func, core::scoring::constraints::BoundFunc, core::scoring::func::SquareWellFunc, core::scoring::func::SkipViolFunc, core::scoring::func::TopOutFunc, core::scoring::func::AmberPeriodicFunc, core::scoring::func::CharmmPeriodicFunc, core::scoring::func::PeriodicFunc, core::scoring::func::IdentityFunc, and core::scoring::func::SigmoidFunc.
References func().
Referenced by core::scoring::func::SigmoidFunc::show_violations(), core::scoring::func::IdentityFunc::show_violations(), core::scoring::func::CharmmPeriodicFunc::show_violations(), core::scoring::func::PeriodicFunc::show_violations(), core::scoring::func::AmberPeriodicFunc::show_violations(), core::scoring::func::TopOutFunc::show_violations(), core::scoring::func::SquareWellFunc::show_violations(), core::scoring::func::SquareWell2Func::show_violations(), core::scoring::func::LinearPenaltyFunction::show_violations(), core::scoring::func::HarmonicFunc::show_violations(), core::scoring::func::MinMultiHarmonicFunc::show_violations(), core::scoring::func::CircularSplineFunc::show_violations(), core::scoring::func::FlatHarmonicFunc::show_violations(), core::scoring::func::FadeFunc::show_violations(), and core::scoring::func::SplineFunc::show_violations().
1.8.7