SheetDB.hh File Reference

#include <protocols/denovo_design/architects/StrandArchitect.hh>
#include <protocols/fldsgn/topology/StrandPairing.hh>
#include <core/pose/Pose.fwd.hh>

Classes
class	protocols::denovo_design::components::SheetDB
	class used to create/manipulate a database of sheets using a list of pdb files More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::denovo_design
	protocols::denovo_design::components

Typedefs
typedef utility::vector1 < core::pose::PoseCOP >	protocols::denovo_design::components::SheetList
	this is the actual map used to store the sheets More...
typedef std::map< std::string, SheetList >	protocols::denovo_design::components::MapByLengths
typedef std::map< std::string, MapByLengths >	protocols::denovo_design::components::MapByOrientations
typedef std::map< core::Size, MapByOrientations >	protocols::denovo_design::components::MapByStrands

Functions
core::Size	protocols::denovo_design::components::num_strands (core::pose::Pose const &pose)
	counts number of strands based on number of jumps. Pose must be a disconnected sheet More...
std::pair< std::string, std::string >	protocols::denovo_design::components::find_orientations_and_lengths (core::pose::Pose const &pose)
	gets a pair of strings, which refer to orientations, and lengths/shifts. Pose secstruct MUST be set More...
std::string	protocols::denovo_design::components::make_strand_info_str (architects::Lengths const &lengths, RegisterShifts const &shifts)
	creates a string key for lengths/shifts based on the given vectors for strand lengths and register shifts More...
core::pose::PoseOP	protocols::denovo_design::components::reverse_chains (core::pose::Pose const &pose)
int	protocols::denovo_design::components::add_to_pose (core::pose::PoseOP newpose, core::pose::Pose const &pose, core::Size s_start, core::Size s_stop)
utility::vector1 < core::pose::PoseOP >	protocols::denovo_design::components::extract_sheets_from_strandlist (utility::vector1< core::pose::PoseOP > const &strands, core::Size const nstrands)
utility::vector1 < core::pose::PoseOP >	protocols::denovo_design::components::extract_sheets_from_pose (core::pose::Pose const &pose, protocols::fldsgn::topology::StrandPairings const &spairs, protocols::fldsgn::topology::SS_Info2 const &ss_info, bool const idealize)
std::string	protocols::denovo_design::components::reverse_orientations (std::string const &orient)
utility::vector1< bool >	protocols::denovo_design::components::parse_orientations (std::string const &orientations)
std::pair< utility::vector1 < core::Size > , utility::vector1< int > >	protocols::denovo_design::components::parse_lengths (std::string const &lengths)
std::string	protocols::denovo_design::components::reverse_lengths (std::string const &orientations, std::string const &lengths)
std::string const &	protocols::denovo_design::components::choose_canonical (std::string const &l1, std::string const &l2)
std::pair< std::string, std::string >	protocols::denovo_design::components::canonicalize (std::string const &orientations, std::string const &lengths)