| a_little_verbose_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| apply(core::pose::Pose &pose) override | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | virtual |
| apply(core::pose::Pose &pose, core::Size const &seqpos_moved) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| apply_after_jump_change(core::pose::Pose &pose, core::Size const &jumpno) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| apply_solutions(core::pose::Pose &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| atom_ids_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| atom_level_domain_map() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| atom_level_domain_map_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| b_ang_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| b_len_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| backtrack(core::kinematics::tree::Atom const *current_atom, utility::vector1< core::Size > &upstream_res, utility::vector1< bool > &is_upstream_res, core::pose::Pose const &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| backward_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| choose_best_solution_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| choose_best_solution_based_on_score_function(core::scoring::ScoreFunctionOP scorefxn) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| choose_least_perturb_solution() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| choose_least_perturb_solution_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | inlinevirtual |
| close_at_all_cutpoints(core::pose::Pose &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| close_the_loop(core::pose::Pose &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| CoarseRNA_LoopCloser() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| create() | protocols::moves::Mover | virtual |
| cutpos_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| cutpos_list() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | inline |
| cutpos_list_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| dof_ids1_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| dof_ids2_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| figure_out_dof_ids_and_offsets(core::pose::Pose const &pose, utility::vector1< core::Real > const &dt_ang) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| figure_out_forward_backward_res_by_backtracking(core::pose::Pose const &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| figure_out_offset(core::pose::Pose const &pose, core::Size const &pivot, core::id::DOF_ID const &dof_id, core::Real const &original_torsion_value, utility::vector1< core::Real > &offset_save) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| figure_out_pivot_res_and_scratch_res() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| figure_out_pivots(core::pose::Pose const &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| figure_out_which_cutpoints_were_affected(core::pose::Pose const &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| fill_chainTORS(core::pose::Pose const &pose, utility::vector1< core::id::NamedAtomID > const &atom_ids, utility::vector1< utility::fixedsizearray1< core::Real, 3 > > &atoms, utility::vector1< core::Real > &dt_ang, utility::vector1< core::Real > &db_ang, utility::vector1< core::Real > &db_len) const | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| fill_solution(core::pose::Pose &pose, core::Size const n) const | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| filter_path(utility::vector1< core::Size > &upstream_res, utility::vector1< bool > const &is_filter_res, core::pose::Pose const &pose) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| forward_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_all_solutions(core::pose::Pose &pose, utility::vector1< core::pose::PoseOP > &pose_list) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| is_backward_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| is_forward_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| is_pivot_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| is_scratch_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| nsol() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | inline |
| nsol_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| offset_save1_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| offset_save2_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| output_chainTORS(utility::vector1< core::Real > const &dt_ang, utility::vector1< core::Real > const &db_ang, utility::vector1< core::Real > const &db_len) const | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| output_forward_backward_res() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| partition_definition() | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | inline |
| partition_definition_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| pivot_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| pivot_to_scratch_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remove_res(utility::vector1< core::Size > &res_vector, core::Size const &res) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| reset_status() | protocols::moves::Mover | |
| scorefxn_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| scratch_res_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| seqpos_moved_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| set_atom_level_domain_map(core::pose::toolbox::AtomLevelDomainMapOP atom_level_domain_map) | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| t_ang_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| verbose_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
| which_scratch_res_is_cut_ | protocols::rna::denovo::coarse::CoarseRNA_LoopCloser | private |
1.8.7