protocols::indexed_structure_store::DirectSegmentLookup Struct Reference

#include <DirectSegmentLookup.hh>

Public Types
typedef DirectSegmentLookupConfig	Config

Public Member Functions
	DirectSegmentLookup (Config conf)
std::vector < DirectSegmentLookupResult >	segment_lookup (ndarray::Array< ResidueEntry, 1 > source_residues, search::StructureDatabase &structure_db, core::pose::Pose &context, platform::Size n_start_res, platform::Size n_end_res, platform::Size c_start_res, platform::Size c_end_res)

Public Attributes
search::PairQuerySummaryStatistics	query_stats
DirectSegmentLookupConfig	config

Member Typedef Documentation

typedef DirectSegmentLookupConfig protocols::indexed_structure_store::DirectSegmentLookup::Config

Constructor & Destructor Documentation

protocols::indexed_structure_store::DirectSegmentLookup::DirectSegmentLookup ( Config  conf )

inline

Member Function Documentation

std::vector< DirectSegmentLookupResult > protocols::indexed_structure_store::DirectSegmentLookup::segment_lookup	(	ndarray::Array< ResidueEntry, 1 >	source_residues,
		search::StructureDatabase &	structure_db,
		core::pose::Pose &	context,
		platform::Size	n_start_res,
		platform::Size	n_end_res,
		platform::Size	c_start_res,
		platform::Size	c_end_res
	)

References protocols::indexed_structure_store::_pose_res(), core::pose::motif::a(), protocols::match::upstream::b, config, protocols::indexed_structure_store::search::PairQueryExecutor::execute(), protocols::indexed_structure_store::DirectSegmentLookupConfig::max_insertion_length, protocols::indexed_structure_store::orient_array(), core::pose::PoseCoordPickMode_N_CA_C_CB, protocols::indexed_structure_store::DirectSegmentLookupResult::query_results, protocols::indexed_structure_store::search::PairQueryExecutor::query_results, query_stats, protocols::indexed_structure_store::search::PairQueryExecutor::query_stats, protocols::indexed_structure_store::DirectSegmentLookupResult::result_residues, protocols::indexed_structure_store::DirectSegmentLookupConfig::rmsd_tolerance, protocols::indexed_structure_store::DirectSegmentLookupConfig::segment_cluster_tolerance, protocols::kinmatch::str(), core::pose::Pose::total_residue(), and protocols::indexed_structure_store::TR().

Referenced by protocols::indexed_structure_store::movers::DirectSegmentLookupMover::apply().

Member Data Documentation

DirectSegmentLookupConfig protocols::indexed_structure_store::DirectSegmentLookup::config

Referenced by segment_lookup().

search::PairQuerySummaryStatistics protocols::indexed_structure_store::DirectSegmentLookup::query_stats

Referenced by segment_lookup().

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The documentation for this struct was generated from the following files:

• src/protocols/indexed_structure_store/DirectSegmentLookup.hh
• src/protocols/indexed_structure_store/DirectSegmentLookup.cc