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protocols::relax::CentroidRelax Member List

This is the complete list of members for protocols::relax::CentroidRelax, including all inherited members.

add_cst_files(std::string const &cstfile)protocols::relax::RelaxProtocolBaseinlineprotected
apply(core::pose::Pose &pose) overrideprotocols::relax::CentroidRelaxvirtual
apply_disulfides(core::pose::Pose &pose)protocols::relax::RelaxProtocolBase
cartesian() const protocols::relax::RelaxProtocolBaseinline
cartesian(bool newval)protocols::relax::RelaxProtocolBase
cen_scorefxn_protocols::relax::CentroidRelaxprivate
CentroidRelax()protocols::relax::CentroidRelax
CentroidRelax(core::kinematics::MoveMapOP mm)protocols::relax::CentroidRelax
CentroidRelax(core::kinematics::MoveMapOP mm, core::scoring::ScoreFunctionOP cen_scorefxn_in)protocols::relax::CentroidRelax
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::relax::CentroidRelaxvirtual
constrain_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_coords(bool constrain_coords)protocols::relax::RelaxProtocolBase
constrain_relax_segments() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_segments(bool constrain_relax_segments)protocols::relax::RelaxProtocolBase
constrain_relax_to_native_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_native_coords(bool constrain_relax_to_native_coords)protocols::relax::RelaxProtocolBase
constrain_relax_to_start_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_start_coords(bool constrain_relax_to_start_coords)protocols::relax::RelaxProtocolBase
coord_constrain_sidechains() const protocols::relax::RelaxProtocolBaseinline
coord_constrain_sidechains(bool coord_constrain_sidechains)protocols::relax::RelaxProtocolBase
create()protocols::moves::Movervirtual
cst_files(core::Size const i) const protocols::relax::RelaxProtocolBaseinlineprotected
def_parametersprotocols::relax::CentroidRelaxprivate
do_final_repack(bool repack_sc)protocols::relax::CentroidRelax
dry_run() const protocols::relax::RelaxProtocolBaseinline
dry_run(bool setting)protocols::relax::RelaxProtocolBase
fa_scorefxn_protocols::relax::CentroidRelaxprivate
fix_omega() const protocols::relax::RelaxProtocolBaseinlineprotected
fix_omega(bool fix_omega)protocols::relax::RelaxProtocolBaseinlineprotected
fresh_instance() const overrideprotocols::relax::RelaxProtocolBaseinlinevirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_movemap() const protocols::relax::RelaxProtocolBase
get_movemap()protocols::relax::RelaxProtocolBase
get_name() const overrideprotocols::relax::CentroidRelaxvirtual
get_native_pose() const protocols::moves::Mover
get_scorefxn() const protocols::relax::RelaxProtocolBase
get_scorefxn()protocols::relax::RelaxProtocolBaseprotected
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_task_factory() const protocols::relax::RelaxProtocolBase
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize_movemap(core::pose::Pose const &pose, core::kinematics::MoveMap &movemap)protocols::relax::RelaxProtocolBaseprotected
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
limit_aroma_chi2() const protocols::relax::RelaxProtocolBaseinlineprotected
max_iter() const protocols::relax::RelaxProtocolBaseinline
max_iter(core::Size max_iter)protocols::relax::RelaxProtocolBase
min_type() const protocols::relax::RelaxProtocolBaseinline
min_type(std::string min_type)protocols::relax::RelaxProtocolBase
minimize_bond_angles() const protocols::relax::RelaxProtocolBaseinline
minimize_bond_angles(bool minimize_bond_angles)protocols::relax::RelaxProtocolBase
minimize_bond_lengths() const protocols::relax::RelaxProtocolBaseinline
minimize_bond_lengths(bool minimize_bond_lengths)protocols::relax::RelaxProtocolBase
minimize_bondangle_subset() const protocols::relax::RelaxProtocolBaseinlineprotected
minimize_bondangle_subset(int minimize_bondangle_subset)protocols::relax::RelaxProtocolBaseinlineprotected
minimize_bondlength_subset() const protocols::relax::RelaxProtocolBaseinlineprotected
minimize_bondlength_subset(int minimize_bondlength_subset)protocols::relax::RelaxProtocolBaseinlineprotected
movemap_protocols::relax::CentroidRelaxprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
output_debug_structure(core::pose::Pose &pose, std::string prefix)protocols::relax::RelaxProtocolBaseprotected
parent typedefprotocols::relax::RelaxProtocolBase
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overrideprotocols::relax::RelaxProtocolBasevirtual
rama_type_protocols::relax::CentroidRelaxprivate
ramp_down_constraints() const protocols::relax::RelaxProtocolBaseinline
ramp_down_constraints(bool ramp_down_constraints)protocols::relax::RelaxProtocolBase
ramp_rama_protocols::relax::CentroidRelaxprivate
ramp_vdw_protocols::relax::CentroidRelaxprivate
read_default_parameters()protocols::relax::CentroidRelaxprivate
register_options()protocols::relax::RelaxProtocolBasestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
RelaxProtocolBase(core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername="RelaxProtocol")protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername, core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
repack_sc_protocols::relax::CentroidRelaxprivate
reset_status()protocols::moves::Mover
rounds_protocols::relax::CentroidRelaxprivate
set_cartesian(bool cart)protocols::relax::CentroidRelax
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_default_coordinate_settings()protocols::relax::RelaxProtocolBase
set_default_minimization_settings()protocols::relax::RelaxProtocolBase
set_default_movemap()protocols::relax::RelaxProtocolBase
set_defaults()protocols::relax::CentroidRelax
set_fa_score_function(core::scoring::ScoreFunctionOP fa_score)protocols::relax::CentroidRelax
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_min_type(std::string min)protocols::relax::CentroidRelax
set_movemap(core::kinematics::MoveMapOP movemap)protocols::relax::RelaxProtocolBase
set_movemap_factory(core::select::movemap::MoveMapFactoryOP mm_factory)protocols::relax::RelaxProtocolBase
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_ramp_rama(bool use)protocols::relax::CentroidRelax
set_ramp_vdw(bool use)protocols::relax::CentroidRelax
set_rounds(core::Size rounds)protocols::relax::CentroidRelax
set_score_function(core::scoring::ScoreFunctionOP cen_score)protocols::relax::CentroidRelax
set_scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::relax::RelaxProtocolBase
set_task_factory(core::pack::task::TaskFactoryOP task_factory)protocols::relax::RelaxProtocolBase
set_type(std::string const &setting)protocols::moves::Moverinline
set_up_constraints(core::pose::Pose &pose, core::kinematics::MoveMap &local_movemap)protocols::relax::RelaxProtocolBaseprotected
set_use_increased_vdw_radii(bool use)protocols::relax::CentroidRelax
set_use_rama2b(bool use)protocols::relax::CentroidRelax
setup_class_movemap_and_constraints(Pose &pose)protocols::relax::CentroidRelaxprivate
setup_increased_vdw_radii()protocols::relax::CentroidRelaxprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
use_increased_vdw_radii_protocols::relax::CentroidRelaxprivate
~CentroidRelax() overrideprotocols::relax::CentroidRelax
~RelaxProtocolBase() overrideprotocols::relax::RelaxProtocolBase
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