protocols::antibody::design::CDRSeqDesignOptions Class Reference

#include <CDRSeqDesignOptions.hh>

Inheritance diagram for protocols::antibody::design::CDRSeqDesignOptions:

Public Member Functions
	CDRSeqDesignOptions ()
	CDRSeqDesignOptions (CDRNameEnum cdr)
	CDRSeqDesignOptions (CDRSeqDesignOptions const &src)
	~CDRSeqDesignOptions () override
void	set_cdr (CDRNameEnum cdr)
CDRNameEnum	cdr () const
void	design (bool design)
bool	design () const
void	design_strategy (SeqDesignStrategyEnum strategy)
SeqDesignStrategyEnum	design_strategy () const
void	fallback_strategy (SeqDesignStrategyEnum strategy)
	Set the fallback strategy - which will be used if using a profile-based primary strategy, and there is not enough data. More...
SeqDesignStrategyEnum	fallback_strategy () const
bool	fallback () const
void	disallow_aa (utility::vector1< core::chemical::AA > const &disallowed)
utility::vector1 < core::chemical::AA >	disallow_aa () const
CDRSeqDesignOptionsOP	clone () const
void	set_defaults ()

Private Attributes
CDRNameEnum	cdr_
bool	design_
SeqDesignStrategyEnum	design_strategy_
SeqDesignStrategyEnum	fallback_strategy_
utility::vector1 < core::chemical::AA >	disallow_aa_

Constructor & Destructor Documentation

protocols::antibody::design::CDRSeqDesignOptions::CDRSeqDesignOptions

(

)

protocols::antibody::design::CDRSeqDesignOptions::CDRSeqDesignOptions

(

CDRNameEnum

cdr

)

References set_defaults().

protocols::antibody::design::CDRSeqDesignOptions::CDRSeqDesignOptions

(

CDRSeqDesignOptions const &

src

)

protocols::antibody::design::CDRSeqDesignOptions::~CDRSeqDesignOptions ( )

overridedefault

Member Function Documentation

CDRNameEnum protocols::antibody::design::CDRSeqDesignOptions::cdr ( ) const

inline

References cdr_.

Referenced by set_cdr().

CDRSeqDesignOptionsOP protocols::antibody::design::CDRSeqDesignOptions::clone

(

)

const

Referenced by protocols::antibody::design::deep_copy().

void protocols::antibody::design::CDRSeqDesignOptions::design

(

bool

design

)

References design(), and design_.

bool protocols::antibody::design::CDRSeqDesignOptions::design ( ) const

inline

References design_.

Referenced by design().

void protocols::antibody::design::CDRSeqDesignOptions::design_strategy

(

SeqDesignStrategyEnum

strategy

)

References design_strategy_.

SeqDesignStrategyEnum protocols::antibody::design::CDRSeqDesignOptions::design_strategy ( ) const

inline

References design_strategy_.

void protocols::antibody::design::CDRSeqDesignOptions::disallow_aa

(

utility::vector1< core::chemical::AA > const &

disallowed

)

References disallow_aa_.

utility::vector1< core::chemical::AA > protocols::antibody::design::CDRSeqDesignOptions::disallow_aa ( ) const

inline

References disallow_aa_.

bool protocols::antibody::design::CDRSeqDesignOptions::fallback

(

)

const

References fallback_strategy_, and protocols::antibody::design::seq_design_none.

void protocols::antibody::design::CDRSeqDesignOptions::fallback_strategy

(

SeqDesignStrategyEnum

strategy

)

Set the fallback strategy - which will be used if using a profile-based primary strategy, and there is not enough data.

References fallback_strategy_.

SeqDesignStrategyEnum protocols::antibody::design::CDRSeqDesignOptions::fallback_strategy ( ) const

inline

References fallback_strategy_.

void protocols::antibody::design::CDRSeqDesignOptions::set_cdr

(

CDRNameEnum

cdr

)

References cdr(), and cdr_.

void protocols::antibody::design::CDRSeqDesignOptions::set_defaults

(

)

References design_, design_strategy_, fallback_strategy_, protocols::antibody::design::seq_design_conservative, and protocols::antibody::design::seq_design_profiles.

Referenced by CDRSeqDesignOptions().

Member Data Documentation

CDRNameEnum protocols::antibody::design::CDRSeqDesignOptions::cdr_

private

Referenced by cdr(), and set_cdr().

bool protocols::antibody::design::CDRSeqDesignOptions::design_

private

Referenced by design(), and set_defaults().

SeqDesignStrategyEnum protocols::antibody::design::CDRSeqDesignOptions::design_strategy_

private

Referenced by design_strategy(), and set_defaults().

utility::vector1< core::chemical::AA > protocols::antibody::design::CDRSeqDesignOptions::disallow_aa_

private

Referenced by disallow_aa().

SeqDesignStrategyEnum protocols::antibody::design::CDRSeqDesignOptions::fallback_strategy_

private

Referenced by fallback(), fallback_strategy(), and set_defaults().

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The documentation for this class was generated from the following files:

• src/protocols/antibody/design/CDRSeqDesignOptions.hh
• src/protocols/antibody/design/CDRSeqDesignOptions.cc