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protocols::coupled_moves::CoupledMovesProtocol Member List

This is the complete list of members for protocols::coupled_moves::CoupledMovesProtocol, including all inherited members.

apply(core::pose::Pose &pose) overrideprotocols::coupled_moves::CoupledMovesProtocolvirtual
backbone_mover_protocols::coupled_moves::CoupledMovesProtocolprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::coupled_moves::CoupledMovesProtocolvirtual
compute_ligand_score_bonus(core::pose::PoseOP pose)protocols::coupled_moves::CoupledMovesProtocol
configure_score_fxn()protocols::coupled_moves::CoupledMovesProtocol
CoupledMovesProtocol()protocols::coupled_moves::CoupledMovesProtocol
CoupledMovesProtocol(CoupledMovesProtocol const &cmp)protocols::coupled_moves::CoupledMovesProtocol
create()protocols::moves::Movervirtual
design_positions_protocols::coupled_moves::CoupledMovesProtocolprivate
exclude_nonclashing_positions(core::pose::PoseOP pose)protocols::coupled_moves::CoupledMovesProtocol
fresh_instance() const overrideprotocols::coupled_moves::CoupledMovesProtocolvirtual
get_additional_output()protocols::moves::Movervirtual
get_backbone_mover() const protocols::coupled_moves::CoupledMovesProtocolinline
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_design_positions() const protocols::coupled_moves::CoupledMovesProtocolinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_ligand_mode() const protocols::coupled_moves::CoupledMovesProtocolinline
get_ligand_prob() const protocols::coupled_moves::CoupledMovesProtocolinline
get_ligand_resnums() const protocols::coupled_moves::CoupledMovesProtocolinline
get_ligand_weight() const protocols::coupled_moves::CoupledMovesProtocolinline
get_loop_size() const protocols::coupled_moves::CoupledMovesProtocolinline
get_move_positions() const protocols::coupled_moves::CoupledMovesProtocolinline
get_move_type() const protocols::coupled_moves::CoupledMovesProtocolinline
get_name() const overrideprotocols::coupled_moves::CoupledMovesProtocolvirtual
get_native_pose() const protocols::moves::Mover
get_ntrials()protocols::coupled_moves::CoupledMovesProtocolinline
get_number_ligands() const protocols::coupled_moves::CoupledMovesProtocolinline
get_perturber() const protocols::coupled_moves::CoupledMovesProtocolinline
get_repack_neighborhood() const protocols::coupled_moves::CoupledMovesProtocolinline
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
get_unique_sequences() const protocols::coupled_moves::CoupledMovesProtocolinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize_from_options()protocols::coupled_moves::CoupledMovesProtocolprivate
initialize_ligand_from_options()protocols::coupled_moves::CoupledMovesProtocolprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
ligand_mode_protocols::coupled_moves::CoupledMovesProtocolprivate
ligand_prob_protocols::coupled_moves::CoupledMovesProtocolprivate
ligand_resnums_protocols::coupled_moves::CoupledMovesProtocolprivate
ligand_weight_protocols::coupled_moves::CoupledMovesProtocolprivate
loop_size_protocols::coupled_moves::CoupledMovesProtocolprivate
main_task_factory_protocols::coupled_moves::CoupledMovesProtocolprivate
move_positions_protocols::coupled_moves::CoupledMovesProtocolprivate
move_type_protocols::coupled_moves::CoupledMovesProtocolprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::coupled_moves::CoupledMovesProtocolstatic
name()protocols::moves::Moverinlinestatic
ntrials_protocols::coupled_moves::CoupledMovesProtocolprivate
number_ligands_protocols::coupled_moves::CoupledMovesProtocolprivate
parse_my_tag(TagCOP, basic::datacache::DataMap &) overrideprotocols::coupled_moves::CoupledMovesProtocolvirtual
perturber_protocols::coupled_moves::CoupledMovesProtocolprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::coupled_moves::CoupledMovesProtocolstatic
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
repack_neighborhood_protocols::coupled_moves::CoupledMovesProtocolprivate
reset_status()protocols::moves::Mover
score_fxn_protocols::coupled_moves::CoupledMovesProtocolprivate
set_backbone_mover(std::string const &backbone_mover)protocols::coupled_moves::CoupledMovesProtocolinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_ligand_mode(bool const ligand_mode)protocols::coupled_moves::CoupledMovesProtocolinline
set_ligand_prob(core::Real const ligand_prob)protocols::coupled_moves::CoupledMovesProtocolinline
set_ligand_weight(core::Real const ligand_weight)protocols::coupled_moves::CoupledMovesProtocolinline
set_loop_size(core::Size loop_size)protocols::coupled_moves::CoupledMovesProtocolinline
set_main_task_factory(core::pack::task::TaskFactoryOP const tf)protocols::coupled_moves::CoupledMovesProtocolinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_ntrials(core::Size ntrials)protocols::coupled_moves::CoupledMovesProtocolinline
set_number_ligands(core::Size const number_ligands)protocols::coupled_moves::CoupledMovesProtocolinline
set_perturber(kinematic_closure::perturbers::PerturberOP perturber)protocols::coupled_moves::CoupledMovesProtocolinline
set_repack_neighborhood(bool repack_neighborhood)protocols::coupled_moves::CoupledMovesProtocolinline
set_score_fxn(core::scoring::ScoreFunctionOP const sf)protocols::coupled_moves::CoupledMovesProtocolinline
set_type(std::string const &setting)protocols::moves::Moverinline
setup_coupled_mover(core::pack::task::PackerTaskOP task, core::pose::PoseOP pose_copy, protocols::simple_moves::CoupledMoverOP coupled_mover)protocols::coupled_moves::CoupledMovesProtocol
setup_coupled_mover_for_ligand(core::pose::PoseOP pose_copy, core::pack::task::PackerTaskOP task, protocols::simple_moves::CoupledMoverOP coupled_mover)protocols::coupled_moves::CoupledMovesProtocol
setup_move_and_design_positions(core::pack::task::PackerTaskCOP task, core::pose::PoseCOP pose)protocols::coupled_moves::CoupledMovesProtocol
setup_move_type(core::Real const move_prob)protocols::coupled_moves::CoupledMovesProtocol
setup_resnum(core::Real const move_prob, protocols::simple_moves::CoupledMoverOP coupled_mover, core::pose::PoseOP pose_copy)protocols::coupled_moves::CoupledMovesProtocol
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
unique_scores_protocols::coupled_moves::CoupledMovesProtocolprivate
unique_sequences_protocols::coupled_moves::CoupledMovesProtocolprivate
write_info_to_log(core::pose::PoseOP pose_copy)protocols::coupled_moves::CoupledMovesProtocol