protocols::coupled_moves::CoupledMovesProtocol Member List

This is the complete list of members for protocols::coupled_moves::CoupledMovesProtocol, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::coupled_moves::CoupledMovesProtocol	virtual
backbone_mover_	protocols::coupled_moves::CoupledMovesProtocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::coupled_moves::CoupledMovesProtocol	virtual
compute_ligand_score_bonus(core::pose::PoseOP pose)	protocols::coupled_moves::CoupledMovesProtocol
configure_score_fxn()	protocols::coupled_moves::CoupledMovesProtocol
CoupledMovesProtocol()	protocols::coupled_moves::CoupledMovesProtocol
CoupledMovesProtocol(CoupledMovesProtocol const &cmp)	protocols::coupled_moves::CoupledMovesProtocol
create()	protocols::moves::Mover	virtual
design_positions_	protocols::coupled_moves::CoupledMovesProtocol	private
exclude_nonclashing_positions(core::pose::PoseOP pose)	protocols::coupled_moves::CoupledMovesProtocol
fresh_instance() const override	protocols::coupled_moves::CoupledMovesProtocol	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_backbone_mover() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_design_positions() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_ligand_mode() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_ligand_prob() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_ligand_resnums() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_ligand_weight() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_loop_size() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_move_positions() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_move_type() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_name() const override	protocols::coupled_moves::CoupledMovesProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_ntrials()	protocols::coupled_moves::CoupledMovesProtocol	inline
get_number_ligands() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_perturber() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_repack_neighborhood() const	protocols::coupled_moves::CoupledMovesProtocol	inline
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
get_unique_sequences() const	protocols::coupled_moves::CoupledMovesProtocol	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initialize_from_options()	protocols::coupled_moves::CoupledMovesProtocol	private
initialize_ligand_from_options()	protocols::coupled_moves::CoupledMovesProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
ligand_mode_	protocols::coupled_moves::CoupledMovesProtocol	private
ligand_prob_	protocols::coupled_moves::CoupledMovesProtocol	private
ligand_resnums_	protocols::coupled_moves::CoupledMovesProtocol	private
ligand_weight_	protocols::coupled_moves::CoupledMovesProtocol	private
loop_size_	protocols::coupled_moves::CoupledMovesProtocol	private
main_task_factory_	protocols::coupled_moves::CoupledMovesProtocol	private
move_positions_	protocols::coupled_moves::CoupledMovesProtocol	private
move_type_	protocols::coupled_moves::CoupledMovesProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::coupled_moves::CoupledMovesProtocol	static
name()	protocols::moves::Mover	inlinestatic
ntrials_	protocols::coupled_moves::CoupledMovesProtocol	private
number_ligands_	protocols::coupled_moves::CoupledMovesProtocol	private
parse_my_tag(TagCOP, basic::datacache::DataMap &) override	protocols::coupled_moves::CoupledMovesProtocol	virtual
perturber_	protocols::coupled_moves::CoupledMovesProtocol	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::coupled_moves::CoupledMovesProtocol	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
repack_neighborhood_	protocols::coupled_moves::CoupledMovesProtocol	private
reset_status()	protocols::moves::Mover
score_fxn_	protocols::coupled_moves::CoupledMovesProtocol	private
set_backbone_mover(std::string const &backbone_mover)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_ligand_mode(bool const ligand_mode)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_ligand_prob(core::Real const ligand_prob)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_ligand_weight(core::Real const ligand_weight)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_loop_size(core::Size loop_size)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_main_task_factory(core::pack::task::TaskFactoryOP const tf)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_ntrials(core::Size ntrials)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_number_ligands(core::Size const number_ligands)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_perturber(kinematic_closure::perturbers::PerturberOP perturber)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_repack_neighborhood(bool repack_neighborhood)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_score_fxn(core::scoring::ScoreFunctionOP const sf)	protocols::coupled_moves::CoupledMovesProtocol	inline
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_coupled_mover(core::pack::task::PackerTaskOP task, core::pose::PoseOP pose_copy, protocols::simple_moves::CoupledMoverOP coupled_mover)	protocols::coupled_moves::CoupledMovesProtocol
setup_coupled_mover_for_ligand(core::pose::PoseOP pose_copy, core::pack::task::PackerTaskOP task, protocols::simple_moves::CoupledMoverOP coupled_mover)	protocols::coupled_moves::CoupledMovesProtocol
setup_move_and_design_positions(core::pack::task::PackerTaskCOP task, core::pose::PoseCOP pose)	protocols::coupled_moves::CoupledMovesProtocol
setup_move_type(core::Real const move_prob)	protocols::coupled_moves::CoupledMovesProtocol
setup_resnum(core::Real const move_prob, protocols::simple_moves::CoupledMoverOP coupled_mover, core::pose::PoseOP pose_copy)	protocols::coupled_moves::CoupledMovesProtocol
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
unique_scores_	protocols::coupled_moves::CoupledMovesProtocol	private
unique_sequences_	protocols::coupled_moves::CoupledMovesProtocol	private
write_info_to_log(core::pose::PoseOP pose_copy)	protocols::coupled_moves::CoupledMovesProtocol