protocols::environment::claims::VirtResClaim Class Reference

#include <VirtResClaim.hh>

Inheritance diagram for protocols::environment::claims::VirtResClaim:

Public Member Functions
	VirtResClaim (ClientMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap const &)
	VirtResClaim (ClientMoverOP owner, LocalPosition parent, std::string const &jump_label, std::string const &vrt_label)
void	yield_elements (FoldTreeSketch const &fts, ResidueElements &elements) const override
	build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...
void	yield_elements (FoldTreeSketch const &fts, JumpElements &elements) const override
	build the JumpElements that represent the inclusion of a jump in the nascent FoldTree More...
void	yield_elements (FoldTreeSketch const &fts, CutElements &elements) const override
	build and export the CutElements that represent the inclusion of a cut in the tree. More...
void	yield_elements (core::pose::Pose const &, DOFElements &elements) const override
	build and export DOFElements, which represent control over non-jump dofs (torsions, bond lengths, angles) final conformation. More...
JumpClaim &	jump ()
void	strength (ControlStrength const &cstr, ControlStrength const &istr)
std::string const &	vrt_label () const
EnvClaimOP	clone () const override
std::string	type () const override
void	show (std::ostream &os) const override
Public Member Functions inherited from protocols::environment::claims::EnvClaim
	~EnvClaim () override
	Virtual destructor. More...
	EnvClaim (ClientMoverOP)
ClientMoverOP	owner () const
	A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag. More...
void	set_owner (ClientMoverOP owner)
void	annotate (core::pose::Pose const &, core::environment::SequenceAnnotationOP) const
	allow the claim to use any internally queued ResidueSelectors to create sequence annotations. More...
virtual void	yield_elements (FoldTreeSketch const &, CutBiasElements &) const
	build and export the CutElements that represent the inclusion of a cut in the tree. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	class_name ()
Static Public Member Functions inherited from protocols::environment::claims::EnvClaim
static EnvClaimOP	make_claim (std::string const &name, ClientMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
	factory method for claims. More...
static bool	is_claim (std::string const &name)
static void	define_envclaim_schema_group (utility::tag::XMLSchemaDefinition &xsd)
static std::string	envclaim_ct_namer (std::string)
static std::string	envclaim_group_name ()

Private Types
typedef EnvClaim	Parent
typedef core::environment::LocalPosition	LocalPosition
typedef core::environment::FoldTreeSketch	FoldTreeSketch

Private Attributes
std::string	vrt_label_
JumpClaim	j_claim_
XYZClaim	xyz_claim_

Additional Inherited Members
Protected Member Functions inherited from protocols::environment::claims::EnvClaim
virtual DOFElement	wrap_dof_id (core::id::DOF_ID const &id) const
ControlStrength	parse_ctrl_str (std::string const &str) const
void	queue_for_annotation (std::string const &label, ResidueSelectorCOP selector)

Member Typedef Documentation

typedef core::environment::FoldTreeSketch protocols::environment::claims::VirtResClaim::FoldTreeSketch

private

typedef core::environment::LocalPosition protocols::environment::claims::VirtResClaim::LocalPosition

private

typedef EnvClaim protocols::environment::claims::VirtResClaim::Parent

private

Constructor & Destructor Documentation

protocols::environment::claims::VirtResClaim::VirtResClaim	(	ClientMoverOP	owner,
		utility::tag::TagCOP	tag,
		basic::datacache::DataMap const &	datamap
	)

References protocols::environment::claims::DOES_NOT_CONTROL, j_claim_, core::environment::LocalPosition::label(), protocols::environment::claims::MUST_CONTROL, protocols::environment::claims::EnvClaim::parse_ctrl_str(), protocols::environment::claims::JumpClaim::physical(), protocols::environment::claims::JumpClaim::pos2(), protocols::environment::claims::EnvClaim::queue_for_annotation(), protocols::environment::claims::JumpClaim::strength(), protocols::environment::claims::XYZClaim::strength(), and xyz_claim_.

protocols::environment::claims::VirtResClaim::VirtResClaim	(	ClientMoverOP	owner,
		LocalPosition	parent,
		std::string const &	jump_label,
		std::string const &	vrt_label
	)

References j_claim_, protocols::environment::claims::MUST_CONTROL, protocols::environment::claims::JumpClaim::physical(), protocols::environment::claims::XYZClaim::strength(), and xyz_claim_.

Member Function Documentation

std::string protocols::environment::claims::VirtResClaim::class_name ( )

static

Referenced by protocols::environment::claims::EnvClaim::define_envclaim_schema_group(), and provide_xml_schema().

EnvClaimOP protocols::environment::claims::VirtResClaim::clone ( ) const

overridevirtual

Implements protocols::environment::claims::EnvClaim.

JumpClaim& protocols::environment::claims::VirtResClaim::jump ( )

inline

References j_claim_.

Referenced by strength().

void protocols::environment::claims::VirtResClaim::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::environment::claims::EnvClaim::envclaim_ct_namer().

Referenced by protocols::environment::claims::EnvClaim::define_envclaim_schema_group().

void protocols::environment::claims::VirtResClaim::show ( std::ostream &  os ) const

overridevirtual

Reimplemented from protocols::environment::claims::EnvClaim.

References j_claim_, protocols::environment::claims::JumpClaim::label(), protocols::environment::claims::EnvClaim::owner(), type(), and vrt_label().

void protocols::environment::claims::VirtResClaim::strength	(	ControlStrength const &	cstr,
		ControlStrength const &	istr
	)

References jump(), protocols::environment::claims::JumpClaim::strength(), protocols::environment::claims::XYZClaim::strength(), and xyz_claim_.

std::string protocols::environment::claims::VirtResClaim::type ( ) const

overridevirtual

Implements protocols::environment::claims::EnvClaim.

Referenced by show().

std::string const & protocols::environment::claims::VirtResClaim::vrt_label

(

)

const

References vrt_label_.

Referenced by show(), and yield_elements().

void protocols::environment::claims::VirtResClaim::yield_elements ( FoldTreeSketch const &  , ResidueElements &    ) const

overridevirtual

build ResidueElements that indicate the introduction of a new peptide edge into the fold tree.

Reimplemented from protocols::environment::claims::EnvClaim.

References protocols::environment::claims::ResidueElement::label, and vrt_label().

void protocols::environment::claims::VirtResClaim::yield_elements ( FoldTreeSketch const &  , JumpElements &    ) const

overridevirtual

build the JumpElements that represent the inclusion of a jump in the nascent FoldTree

Reimplemented from protocols::environment::claims::EnvClaim.

References j_claim_, and protocols::environment::claims::JumpClaim::yield_elements().

void protocols::environment::claims::VirtResClaim::yield_elements ( FoldTreeSketch const &  , CutElements &    ) const

overridevirtual

build and export the CutElements that represent the inclusion of a cut in the tree.

Reimplemented from protocols::environment::claims::EnvClaim.

References j_claim_, and protocols::environment::claims::JumpClaim::yield_elements().

void protocols::environment::claims::VirtResClaim::yield_elements ( core::pose::Pose const &  , DOFElements &    ) const

overridevirtual

build and export DOFElements, which represent control over non-jump dofs (torsions, bond lengths, angles) final conformation.

Reimplemented from protocols::environment::claims::EnvClaim.

References protocols::environment::claims::DOFElement::c_str, core::pose::Pose::conformation(), core::kinematics::FoldTree::downstream_jump_residue(), core::conformation::Conformation::fold_tree(), protocols::environment::claims::DOFElement::i_str, core::conformation::Conformation::jump_atom_id(), protocols::environment::claims::MUST_CONTROL, core::kinematics::FoldTree::num_jump(), core::id::RB1, core::id::RB6, core::kinematics::FoldTree::upstream_jump_residue(), vrt_label(), protocols::environment::claims::EnvClaim::wrap_dof_id(), xyz_claim_, and protocols::environment::claims::XYZClaim::yield_elements().

Member Data Documentation

JumpClaim protocols::environment::claims::VirtResClaim::j_claim_

private

Referenced by jump(), show(), VirtResClaim(), and yield_elements().

std::string protocols::environment::claims::VirtResClaim::vrt_label_

private

Referenced by vrt_label().

XYZClaim protocols::environment::claims::VirtResClaim::xyz_claim_

private

Referenced by strength(), VirtResClaim(), and yield_elements().

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The documentation for this class was generated from the following files:

• src/protocols/environment/claims/VirtResClaim.hh
• src/protocols/environment/claims/VirtResClaim.cc