SwitchResidueTypeSet.cc File Reference

Functions for switching the residue type set of a pose. More...

#include <core/util/SwitchResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/MutableResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeFinder.hh>
#include <core/chemical/PoseResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/util.hh>
#include <core/chemical/residue_support.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/util.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/Energies.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/util/disulfide_util.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/multithreading.OptionKeys.gen.hh>
#include <utility/vector1.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::util

Functions
static basic::Tracer	core::util::TR ("core.util.switchresiduetypeset")
void	core::util::switch_to_residue_type_set (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &type_set, core::Size const threads_to_request, bool allow_sloppy_match, bool switch_protein_res_only, bool keep_energies)
void	core::util::switch_to_residue_type_set (core::pose::Pose &pose, core::chemical::TypeSetMode type_set_mode, core::Size const threads_to_request, bool allow_sloppy_match, bool switch_protein_res_only, bool keep_energies)
void	core::util::switch_to_residue_type_set (core::pose::Pose &pose, std::string const &type_set_name, core::Size const threads_to_request, bool allow_sloppy_match, bool switch_protein_res_only, bool keep_energies)
void	core::util::switch_to_centroid_rot_set (core::pose::Pose &pose, core::conformation::symmetry::SymmetryInfoCOP symm_info, core::chemical::ResidueTypeSet const &rsd_set, bool)
core::chemical::MutableResidueTypeOP	core::util::generate_replacement_restype (core::chemical::ResidueType const &restype, core::chemical::TypeSetMode mode)
	Attempt to generate a new residue type of the appropriate mode. If not possible, return a nullptr. More...
void	core::util::rebuild_fa_disulfides (core::pose::Pose &pose, core::Size const threads_to_request=0)
	Rebuild disulfides after a transition to a full atom ResidueTypeSet. More...

Detailed Description

Functions for switching the residue type set of a pose.

Author

P. Douglas Renfrew (renfr.nosp@m.ew@n.nosp@m.yu.ed.nosp@m.u)