#include <MoveMapFactory.hh>

Inheritance diagram for core::select::movemap::MoveMapFactory:

Classes
struct	MMJumpAction
	An action for a set of Jumps. More...

struct	MMResAction
	An action to be applied to a residue all members of a particular part (i.e. all backbone torsions, or all chi torsions) More...

struct	MMResIndexAction
	An action for a particular indexed thing (i.e. a particular backbone, or a particular chi torsion). More...

Public Member Functions
	MoveMapFactory ()
	Constructor. More...

	MoveMapFactory (MoveMapFactory const &src)

MoveMapFactory &	operator= (MoveMapFactory const &rhs)

MoveMapFactoryOP	clone () const

	~MoveMapFactory () override
	Destructor. More...

void	all_bb (bool setting)

void	add_bb_action (move_map_action action, residue_selector::ResidueSelectorCOP selector)

void	add_bb_index_action (Size index, move_map_action action, residue_selector::ResidueSelectorCOP selector)

void	all_chi (bool setting)

void	add_chi_action (move_map_action action, residue_selector::ResidueSelectorCOP selector)

void	all_nu (bool setting)

void	add_nu_action (move_map_action action, residue_selector::ResidueSelectorCOP selector)

void	all_branches (bool setting)

void	add_branches_action (move_map_action action, residue_selector::ResidueSelectorCOP selector)

void	all_jumps (bool setting)

void	add_jump_action (move_map_action action, jump_selector::JumpSelectorCOP selector)

void	all_bondangles (bool setting)

void	add_bondangles_action (move_map_action action, residue_selector::ResidueSelectorCOP selector)

void	all_bondlengths (bool setting)

void	add_bondlengths_action (move_map_action action, residue_selector::ResidueSelectorCOP selector)

void	set_cartesian (bool setting)
	Option to use specific cartesian settings for the movemap. Used for glycans as dihedral vs cart MM settings are completely different to move the same underlying coordinates in IUPAC definitions. More...

bool	cartesian () const

kinematics::MoveMapOP	create_movemap_from_pose (core::pose::Pose const &pose) const
	Construct a MoveMap from the internally held ResidueSelectors and JumpSelectors. More...

void	edit_movemap_given_pose (core::pose::Pose const &pose, kinematics::MoveMap &mm) const

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datacache)
	Initialize any data members of this instance from an input tag and a DataMap object. More...

Static Public Member Functions
static std::string	element_name ()

static std::string	mmf_ct_namer (std::string const &element)

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
bool	use_all_bb_ = false

bool	all_bb_setting_ = false

std::list< MMResAction >	bb_actions_

std::list< MMResIndexAction >	bb_index_actions_

bool	use_all_chi_ = false

bool	all_chi_setting_ = false

std::list< MMResAction >	chi_actions_

bool	use_all_nu_ = false

bool	all_nu_setting_ = false

std::list< MMResAction >	nu_actions_

bool	use_all_branches_ = false

bool	all_branches_setting_ = false

std::list< MMResAction >	branches_actions_

bool	use_all_jumps_ = false

bool	all_jumps_setting_ = false

std::list< MMJumpAction >	jump_actions_

bool	use_all_bondangles_ = false

bool	all_bondangles_setting_ = false

std::list< MMResAction >	bondangles_actions_

bool	use_all_bondlengths_ = false

bool	all_bondlengths_setting_ = false

std::list< MMResAction >	bondlengths_actions_

bool	cartesian_specific_ = false

Constructor & Destructor Documentation

core::select::movemap::MoveMapFactory::MoveMapFactory ( )

default

Constructor.

core::select::movemap::MoveMapFactory::MoveMapFactory ( MoveMapFactory const & src )

default

core::select::movemap::MoveMapFactory::~MoveMapFactory ( )

overridedefault

Destructor.

Member Function Documentation

void core::select::movemap::MoveMapFactory::add_bb_action	(	move_map_action	action,
		residue_selector::ResidueSelectorCOP	selector
	)

References bb_actions_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::add_bb_index_action	(	Size	index,
		move_map_action	action,
		residue_selector::ResidueSelectorCOP	selector
	)

References bb_index_actions_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::add_bondangles_action	(	move_map_action	action,
		residue_selector::ResidueSelectorCOP	selector
	)

References bondangles_actions_.

void core::select::movemap::MoveMapFactory::add_bondlengths_action	(	move_map_action	action,
		residue_selector::ResidueSelectorCOP	selector
	)

References bondlengths_actions_.

void core::select::movemap::MoveMapFactory::add_branches_action	(	move_map_action	action,
		residue_selector::ResidueSelectorCOP	selector
	)

References branches_actions_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::add_chi_action	(	move_map_action	action,
		residue_selector::ResidueSelectorCOP	selector
	)

References chi_actions_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::add_jump_action	(	move_map_action	action,
		jump_selector::JumpSelectorCOP	selector
	)

References jump_actions_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::add_nu_action	(	move_map_action	action,
		residue_selector::ResidueSelectorCOP	selector
	)

References nu_actions_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::all_bb ( bool setting )

References all_bb_setting_, and use_all_bb_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::all_bondangles ( bool setting )

References all_bondangles_setting_, and use_all_bondangles_.

void core::select::movemap::MoveMapFactory::all_bondlengths ( bool setting )

References all_bondlengths_setting_, and use_all_bondlengths_.

void core::select::movemap::MoveMapFactory::all_branches ( bool setting )

References all_branches_setting_, and use_all_branches_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::all_chi ( bool setting )

References all_chi_setting_, and use_all_chi_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::all_jumps ( bool setting )

References all_jumps_setting_, and use_all_jumps_.

Referenced by parse_my_tag().

void core::select::movemap::MoveMapFactory::all_nu ( bool setting )

References all_nu_setting_, and use_all_nu_.

Referenced by parse_my_tag().

bool core::select::movemap::MoveMapFactory::cartesian ( ) const

References cartesian_specific_.

MoveMapFactoryOP core::select::movemap::MoveMapFactory::clone ( ) const

kinematics::MoveMapOP core::select::movemap::MoveMapFactory::create_movemap_from_pose ( core::pose::Pose const & pose ) const

Construct a MoveMap from the internally held ResidueSelectors and JumpSelectors.

References edit_movemap_given_pose().

void core::select::movemap::MoveMapFactory::edit_movemap_given_pose	(	core::pose::Pose const &	pose,
		kinematics::MoveMap &	mm
	)		const

References all_bb_setting_, all_bondangles_setting_, all_bondlengths_setting_, all_branches_setting_, all_chi_setting_, all_jumps_setting_, all_nu_setting_, bb_actions_, bb_index_actions_, bondangles_actions_, bondlengths_actions_, branches_actions_, cartesian_specific_, chi_actions_, core::id::D, core::chemical::ResidueType::is_carbohydrate(), core::pose::symmetry::is_symmetric(), jump_actions_, core::pose::symmetry::make_symmetric_movemap(), core::chemical::ResidueType::natoms(), nu_actions_, core::pose::Pose::residue_type(), core::kinematics::MoveMap::set(), core::kinematics::MoveMap::set_bb(), core::kinematics::MoveMap::set_branches(), core::kinematics::MoveMap::set_chi(), core::pose::carbohydrates::set_glycan_iupac_bb_torsions(), core::pose::carbohydrates::set_glycan_iupac_chi_torsions(), core::kinematics::MoveMap::set_jump(), core::kinematics::MoveMap::set_nu(), core::id::THETA, use_all_bb_, use_all_bondangles_, use_all_bondlengths_, use_all_branches_, use_all_chi_, use_all_jumps_, and use_all_nu_.

Referenced by create_movemap_from_pose().

std::string core::select::movemap::MoveMapFactory::element_name ( )

static

Referenced by provide_xml_schema().

std::string core::select::movemap::MoveMapFactory::mmf_ct_namer ( std::string const & element )

static

Referenced by provide_xml_schema().

MoveMapFactory & core::select::movemap::MoveMapFactory::operator= ( MoveMapFactory const & rhs )

default

void core::select::movemap::MoveMapFactory::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	datacache
	)

Initialize any data members of this instance from an input tag and a DataMap object.

References add_bb_action(), add_bb_index_action(), add_branches_action(), add_chi_action(), add_jump_action(), add_nu_action(), all_bb(), all_branches(), all_chi(), all_jumps(), all_nu(), cartesian_specific_, core::select::movemap::MoveMapFactory::MMResIndexAction::index, core::select::jump_selector::parse_jump_selector(), core::select::residue_selector::parse_residue_selector(), and set_cartesian().

void core::select::movemap::MoveMapFactory::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::select::jump_selector::attributes_for_parse_jump_selector_when_required(), core::select::residue_selector::attributes_for_parse_residue_selector_when_required(), element_name(), and mmf_ct_namer().

void core::select::movemap::MoveMapFactory::set_cartesian ( bool setting )

Option to use specific cartesian settings for the movemap. Used for glycans as dihedral vs cart MM settings are completely different to move the same underlying coordinates in IUPAC definitions.

References cartesian_specific_.

Referenced by parse_my_tag().