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Rosetta
2021.16
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Rosetta
2021.16
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Utility functions for the residue selector classes, primarily, in constructing XML-Schema type definitions. More...
#include <core/select/residue_selector/ResidueSelector.fwd.hh>#include <core/types.hh>#include <core/pose/Pose.fwd.hh>#include <basic/datacache/DataMap.fwd.hh>#include <utility/tag/Tag.fwd.hh>#include <utility/tag/XMLSchemaGeneration.fwd.hh>#include <string>#include <list>#include <algorithm>#include <map>Namespaces | |
| core | |
| A class for reading in the atom type properties. | |
| core::select | |
| core::select::residue_selector | |
Functions | |
| std::map< core::Size, core::Size > | core::select::residue_selector::get_residue_mapping_from_selectors (select::residue_selector::ResidueSelectorCOP selector, select::residue_selector::ResidueSelectorCOP selector_ref, core::pose::Pose const &pose, core::pose::Pose const &ref_pose, bool desymmetrize_selectors=true) |
| Determine the residue mapping by residue selector and the reference selector. If both are null, will get a map of all residues. De-symmetrizes both residue selectors. More... | |
| std::vector< std::map < core::Size, core::Size > > | core::select::residue_selector::get_cyclic_pose_residue_mappings_from_selectors (select::residue_selector::ResidueSelectorCOP residue_selector, select::residue_selector::ResidueSelectorCOP residue_selector_ref, core::pose::Pose const &pose, core::pose::Pose const &ref_pose, bool desymmetrize_selectors) |
| std::string | core::select::residue_selector::complex_type_name_for_residue_selector (std::string const &rs_type) |
| Used to name the xs:complexType for a residue selector that is created with the "rs_type" tag-name. Does so by prepending "rs_" and appending "Type" to the "rs_type". E.g., "rs_AndType" would be the name given to the complexType to describe the format of the AndResidueSelector. More... | |
| void | core::select::residue_selector::xsd_type_definition_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &rs_type, std::string const &rs_description, utility::tag::AttributeList const &attributes) |
| Define the XML schema definition for a ResidueSelector that contains no other ResidueSelectors but may contain some number of attributes (aka options). More... | |
| void | core::select::residue_selector::xsd_type_definition_w_attributes_and_optional_subselector (utility::tag::XMLSchemaDefinition &xsd, std::string const &rs_type, std::string const &rs_description, utility::tag::AttributeList const &attributes) |
| Define the XML schema definition for a ResidueSelector that contains a single ResidueSelector in its set of sub-elements (aka sub-tags) and may contain some number of attributes (aka options). More... | |
| void | core::select::residue_selector::xsd_type_definition_w_attributes_and_optional_subselectors (utility::tag::XMLSchemaDefinition &xsd, std::string const &rs_type, std::string const &rs_description, utility::tag::AttributeList const &attributes) |
| Define the XML schema definition for a ResidueSelector that contains more than one ResidueSelector in its set of sub-elements (aka sub-tags) and may contain some number of attributes (aka options). More... | |
| void | core::select::residue_selector::xsd_type_definition_w_attributes_and_optional_subselectors (utility::tag::XMLSchemaDefinition &xsd, std::string const &rs_type, std::string const &rs_description, core::Size min_occurrence, core::Size max_occurrence, utility::tag::AttributeList const &attributes) |
| Define the XML schema definition for a ResidueSelector that contains more than one ResidueSelector in its set of sub-elements (aka sub-tags) and may contain some number of attributes (aka options). More... | |
| ResidueSelectorCOP | core::select::residue_selector::parse_residue_selector (utility::tag::TagCOP tag, basic::datacache::DataMap const &data, std::string const &option_name="residue_selector") |
| returns a residue selector given a tag and datamap More... | |
| void | core::select::residue_selector::attributes_for_parse_residue_selector_default_option_name (utility::tag::AttributeList &attlist, std::string const &documentation_string) |
| Companion function for parse_residue_selector. More... | |
| void | core::select::residue_selector::attributes_for_parse_residue_selector (utility::tag::AttributeList &attlist, std::string const &option_name="residue_selector", std::string const &documentation_string="") |
| Companion function for parse_residue_selector. More... | |
| void | core::select::residue_selector::attributes_for_parse_residue_selector_when_required (utility::tag::AttributeList &attlist, std::string const &option_name="residue_selector", std::string const &documentation_string="") |
| Companion function for parse_residue_selector to be used when it is unacceptible for the parse_residue_selector function to return a null pointer. More... | |
| ResidueSelectorCOP | core::select::residue_selector::get_residue_selector (std::string const &selector_name, basic::datacache::DataMap const &data) |
| returns a residue selector given a selector's name and datamap More... | |
| ResidueSelectorOP | core::select::residue_selector::get_embedded_residue_selector (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) |
| returns a residue selector embeded in a tag. for example, the Chain selector in the example below: More... | |
| utility::vector1 < ResidueSelectorOP > | core::select::residue_selector::get_embedded_residue_selectors (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) |
| returns residue selectors embeded in a tag. for example, the Chain selector in the example below: More... | |
| ResidueSelectorOP | core::select::residue_selector::OR_combine (ResidueSelectorOP sele1, ResidueSelectorOP sele2) |
| If sele1 is already an OrResidueSelector, add sele2 to it. If not, return a new OrResidueSelector which combines the two. More... | |
| ResidueSubset | core::select::residue_selector::OR_combine (ResidueSubset const &sele1, ResidueSubset const &sele2) |
| Combine two residue subsets with OR logic. More... | |
| ResidueSelectorOP | core::select::residue_selector::AND_combine (ResidueSelectorOP sele1, ResidueSelectorOP sele2) |
| If sele1 is already an AndResidueSelector, add sele2 to it. If not, return a new AndResidueSelector which combines the two. More... | |
| ResidueSubset | core::select::residue_selector::AND_combine (ResidueSubset const &sele1, ResidueSubset const &sele2) |
| Combine two residue ssubsets with OR logic. More... | |
| bool | core::select::residue_selector::all_false_selection (ResidueSubset const &selection) |
| Returns True if all the positions in the ResidueSubset are False. More... | |
| bool | core::select::residue_selector::all_true_selection (ResidueSubset const &selection) |
| Returns True if all the positions in the ResidueSubset are True. More... | |
| bool | core::select::residue_selector::has_any_false_selection (ResidueSubset const &selection) |
| Returns True if at least one position in the ResidueSubset is False. More... | |
| bool | core::select::residue_selector::has_any_true_selection (ResidueSubset const &selection) |
| Returns True if at least one position in the ResidueSubset is True. More... | |
| core::Size | core::select::residue_selector::count_selected (ResidueSubset const &selection) |
| Returns the number of selected residues in the ResidueSubset. More... | |
| utility::vector1< core::Size > | core::select::residue_selector::selection_positions (ResidueSubset const &selection) |
| Returns the Rosetta Numbering corresponding to the selected residues. More... | |
| bool | core::select::residue_selector::are_selections_equal (ResidueSubset const &selection1, ResidueSubset const &selection2) |
| Evaluate if two ResidueSubsets are equal. More... | |
| std::string | core::select::residue_selector::represent_residue_selector (ResidueSubset const &selection, std::string const &is_true, std::string const &is_false) |
| Returns a string representing the ResidueSubset (ยท for non selected, * for selected) More... | |
| ResidueSelectorOP | core::select::residue_selector::parse_residue_selector_logic_string (basic::datacache::DataMap const &dm, utility::tag::TagCOP const &tag, std::string const &selector_logic_attribute_name="selector_logic") |
| Read a string from the input tag with the indicated attribute name and interpret it as boolean logical operations on a set of existing ResidueSelectors that are already stored in the DataMap. More... | |
| void | core::select::residue_selector::attributes_for_parse_residue_selector_logic_string (utility::tag::XMLSchemaDefinition &xsd, utility::tag::AttributeList &attributes, std::string const &selector_logic_attribute_name="selector_logic") |
| Append an (optional) attribute that will be used in the call to parse_residue_selector_logic_string. More... | |
| bool | core::select::residue_selector::regex_usable () |
| test regex support More... | |
Utility functions for the residue selector classes, primarily, in constructing XML-Schema type definitions.
1.8.7