core::import_pose::libraries::BasePairStepSequence Class Reference

#include <BasePairStepLibrary.hh>

Inheritance diagram for core::import_pose::libraries::BasePairStepSequence:

Public Member Functions
	BasePairStepSequence (char const nt_i, char const nt_i_next, char const nt_j, char const nt_j_next, core::Size const num_bulge=0)
	BasePairStepSequence (std::string const &sequence, core::Size const i, core::Size const i_next, core::Size const j, core::Size const j_next)
	BasePairStepSequence (std::string const &sequence, core::pose::rna::BasePairStep const &base_pair_step)
	~BasePairStepSequence () override
std::string	tag () const
std::string	subdir () const
int const &	num_bulge () const

Private Types
typedef std::pair< char, char >	DinucleotideStrandSequence

Private Attributes
std::pair < DinucleotideStrandSequence, DinucleotideStrandSequence >	base_pair_step_sequence_
int	num_bulge_

Friends
bool	operator< (BasePairStepSequence const &lhs, BasePairStepSequence const &rhs)
std::ostream &	operator<< (std::ostream &os, BasePairStepSequence const &bps)

Member Typedef Documentation

typedef std::pair< char, char > core::import_pose::libraries::BasePairStepSequence::DinucleotideStrandSequence

private

Constructor & Destructor Documentation

core::import_pose::libraries::BasePairStepSequence::BasePairStepSequence	(	char const	nt_i,
		char const	nt_i_next,
		char const	nt_j,
		char const	nt_j_next,
		core::Size const	num_bulge = 0
	)

core::import_pose::libraries::BasePairStepSequence::BasePairStepSequence	(	std::string const &	sequence,
		core::Size const	i,
		core::Size const	i_next,
		core::Size const	j,
		core::Size const	j_next
	)

core::import_pose::libraries::BasePairStepSequence::BasePairStepSequence	(	std::string const &	sequence,
		core::pose::rna::BasePairStep const &	base_pair_step
	)

References core::pose::rna::BasePairStep::i(), core::pose::rna::BasePairStep::i_next(), core::pose::rna::BasePairStep::j(), and core::pose::rna::BasePairStep::j_next().

core::import_pose::libraries::BasePairStepSequence::~BasePairStepSequence ( )

inlineoverride

Member Function Documentation

int const& core::import_pose::libraries::BasePairStepSequence::num_bulge ( ) const

inline

References num_bulge_.

Referenced by core::import_pose::libraries::BasePairStepLibrary::initialize_data().

std::string core::import_pose::libraries::BasePairStepSequence::subdir

(

)

const

References core::chemical::element::I, and core::import_pose::MAX_BULGE_LENGTH().

Referenced by core::import_pose::libraries::BasePairStepLibrary::initialize_data().

std::string core::import_pose::libraries::BasePairStepSequence::tag ( ) const

inline

References base_pair_step_sequence_, and num_bulge_.

Referenced by core::import_pose::libraries::check_base_pair_step_availability(), and core::import_pose::libraries::BasePairStepLibrary::initialize_data().

Friends And Related Function Documentation

bool operator< ( BasePairStepSequence const &  lhs, BasePairStepSequence const &  rhs  )

friend

std::ostream& operator<< ( std::ostream &  os, BasePairStepSequence const &  bps  )

friend

Member Data Documentation

std::pair< DinucleotideStrandSequence, DinucleotideStrandSequence > core::import_pose::libraries::BasePairStepSequence::base_pair_step_sequence_

private

Referenced by core::import_pose::libraries::operator<<(), and tag().

int core::import_pose::libraries::BasePairStepSequence::num_bulge_

private

Referenced by num_bulge(), core::import_pose::libraries::operator<<(), and tag().

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The documentation for this class was generated from the following files:

• src/core/import_pose/libraries/BasePairStepLibrary.hh
• src/core/import_pose/libraries/BasePairStepLibrary.cc