protocols::legacy_sewing::SegmentGraph Class Reference

#include <Model.hh>

Inheritance diagram for protocols::legacy_sewing::SegmentGraph:

Public Member Functions
void	add_connection (core::Size i, core::Size j)
core::Size	c_segment (core::Size ind) const
core::Size	n_segment (core::Size ind) const
bool	has_next (core::Size ind) const
void	insert_connected_segment (SewSegment segment, core::Size ind)
std::set< SewSegment >	erase_segments (std::set< SewSegment > segments_to_erase)
core::Size	next (core::Size ind) const
core::Size	previous (core::Size ind) const
bool	has_previous (core::Size ind) const
std::map< core::Size, core::Size >	forward_connections () const
std::map< core::Size, core::Size >	reverse_connections () const
void	reorder (utility::vector1< core::Size > new_order)
void	clear_connections ()

Private Attributes
std::map< core::Size, core::Size >	forward_connections_
std::map< core::Size, core::Size >	reverse_connections_

Detailed Description

Simple wrapper around a vector1 of SewSegments, which maintains connection information.

Member Function Documentation

void protocols::legacy_sewing::SegmentGraph::add_connection	(	core::Size	i,
		core::Size	j
	)

References forward_connections_, and reverse_connections_.

Referenced by protocols::legacy_sewing::add_linker_segments(), protocols::legacy_sewing::Assembly::add_model(), protocols::legacy_sewing::DisembodiedAssembly::append_model(), protocols::legacy_sewing::ContinuousAssembly::append_model(), protocols::legacy_sewing::create_model_from_pose(), and protocols::legacy_sewing::read_model_file().

core::Size protocols::legacy_sewing::SegmentGraph::c_segment

(

core::Size

ind

)

const

References forward_connections_.

Referenced by protocols::legacy_sewing::Assembly::find_possible_orders().

void protocols::legacy_sewing::SegmentGraph::clear_connections

(

)

References forward_connections_, and reverse_connections_.

Referenced by protocols::legacy_sewing::ContinuousAssembly::append_model().

std::set< SewSegment > protocols::legacy_sewing::SegmentGraph::erase_segments

(

std::set< SewSegment >

segments_to_erase

)

References forward_connections_, has_next(), has_previous(), next(), previous(), and reverse_connections_.

std::map< core::Size, core::Size > protocols::legacy_sewing::SegmentGraph::forward_connections

(

)

const

References forward_connections_.

Referenced by protocols::legacy_sewing::Assembly::add_model().

bool protocols::legacy_sewing::SegmentGraph::has_next

(

core::Size

ind

)

const

References forward_connections_.

Referenced by protocols::legacy_sewing::DisembodiedAssembly::append_model(), protocols::legacy_sewing::ContinuousAssembly::append_model(), protocols::legacy_sewing::Assembly::disconnected_segments(), erase_segments(), protocols::legacy_sewing::Assembly::get_chimera_segments(), protocols::legacy_sewing::Assembly::pose_loop_anchors(), protocols::legacy_sewing::Hasher::remove_connection_inconsistencies(), and reorder().

bool protocols::legacy_sewing::SegmentGraph::has_previous

(

core::Size

ind

)

const

References reverse_connections_.

Referenced by protocols::legacy_sewing::DisembodiedAssembly::append_model(), protocols::legacy_sewing::ContinuousAssembly::append_model(), erase_segments(), protocols::legacy_sewing::Assembly::find_possible_orders(), protocols::legacy_sewing::Assembly::get_chimera_segments(), and protocols::legacy_sewing::Hasher::remove_connection_inconsistencies().

void protocols::legacy_sewing::SegmentGraph::insert_connected_segment	(	SewSegment	segment,
		core::Size	ind
	)

References forward_connections_, and reverse_connections_.

Referenced by protocols::legacy_sewing::Assembly::add_loop_segment().

core::Size protocols::legacy_sewing::SegmentGraph::n_segment

(

core::Size

ind

)

const

References reverse_connections_.

core::Size protocols::legacy_sewing::SegmentGraph::next

(

core::Size

ind

)

const

References forward_connections_.

Referenced by protocols::legacy_sewing::DisembodiedAssembly::append_model(), erase_segments(), and reorder().

core::Size protocols::legacy_sewing::SegmentGraph::previous

(

core::Size

ind

)

const

References reverse_connections_.

Referenced by protocols::legacy_sewing::DisembodiedAssembly::append_model(), and erase_segments().

void protocols::legacy_sewing::SegmentGraph::reorder

(

utility::vector1< core::Size >

new_order

)

References forward_connections_, has_next(), next(), and reverse_connections_.

Referenced by protocols::legacy_sewing::Assembly::reorder(), and protocols::legacy_sewing::Assembly::reorder_randomly().

std::map< core::Size, core::Size > protocols::legacy_sewing::SegmentGraph::reverse_connections

(

)

const

References reverse_connections_.

Member Data Documentation

std::map<core::Size, core::Size> protocols::legacy_sewing::SegmentGraph::forward_connections_

private

Referenced by add_connection(), c_segment(), clear_connections(), erase_segments(), forward_connections(), has_next(), insert_connected_segment(), next(), and reorder().

std::map<core::Size, core::Size> protocols::legacy_sewing::SegmentGraph::reverse_connections_

private

Referenced by add_connection(), clear_connections(), erase_segments(), has_previous(), insert_connected_segment(), n_segment(), previous(), reorder(), and reverse_connections().

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The documentation for this class was generated from the following files:

• src/protocols/legacy_sewing/conformation/Model.hh
• src/protocols/legacy_sewing/conformation/Model.cc