| apply(core::pose::Pose &pose) override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| build_rotamer_list(core::conformation::Residue const &, bool filter, RotamerList &) const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
| change_chi_without_replacing_residue() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| ChiVector typedef | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | virtual |
| compute_proposal_density(core::conformation::Residue const &new_residue, core::Size const resnum, core::chemical::ResidueType const &old_res_type, ChiVector const &old_chi) const override | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | virtual |
| compute_rotdensities(RotamerList const &, ChiVector const &new_chi, core::Real &rot_density) const | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | protected |
| protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover::compute_rotdensities(RotamerList const &, ChiVector const &old_chi, ChiVector const &new_chi, core::Real &within_rot_density) const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
| compute_tempered_rotamer_probabilities(RotamerList const &, core::Real temperature, utility::vector1< core::Real > &prob, core::Real &normalize) const | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | protected |
| create() | protocols::moves::Mover | virtual |
| dof_id_ranges(core::pose::Pose &pose) override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| have_mutated_residue() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | inlinevirtual |
| idealize_sidechains(core::pose::Pose &pose) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_task(core::pose::Pose const &pose) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| is_multi_trial() | protocols::canonical_sampling::ThermodynamicMover | virtual |
| JumpRotamerSidechainMover() | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | |
| JumpRotamerSidechainMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library) | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | |
| JumpRotamerSidechainMover(JumpRotamerSidechainMover const &mover) | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | |
| last_inner_score_delta_over_temperature() | protocols::canonical_sampling::ThermodynamicMover | virtual |
| last_proposal_density_ratio() override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| make_chi_move(core::conformation::Residue const &residue, ChiVector const &old_chi, ChiVector &new_chi) override | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | virtual |
| make_move(core::conformation::ResidueOP res) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| metropolis_hastings_mover() | protocols::canonical_sampling::ThermodynamicMover | virtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
| packed_residues() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| Parent typedef | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | virtual |
| PerturbRotamerSidechainMover() | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
| PerturbRotamerSidechainMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
| PerturbRotamerSidechainMover(PerturbRotamerSidechainMover const &mover) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| preserve_detailed_balance() const override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| residue_packed() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| rotamer_library() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| RotamerList typedef | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | |
| sample_rotwells_unif_ | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | private |
| set_change_chi_without_replacing_residue(bool setting) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_defaults() | protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover | protected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_metropolis_hastings_mover(protocols::canonical_sampling::MetropolisHastingsMoverAP metropolis_hastings_mover) | protocols::canonical_sampling::ThermodynamicMover | virtual |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_preserve_detailed_balance(bool setting) override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| set_task(core::pack::task::PackerTaskCOP task) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| set_task_factory(core::pack::task::TaskFactoryCOP task_factory) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| set_temperature(core::Real setting) | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | inline |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| SidechainMoverBase() | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| SidechainMoverBase(core::pack::dunbrack::RotamerLibrary const &rotamer_library) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| SidechainMoverBase(SidechainMoverBase const &mover) | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| Strings typedef | protocols::moves::Mover | |
| suggest_residue_number(core::pose::Pose const &) const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| TagCOP typedef | protocols::moves::Mover | |
| task() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| task_factory() const | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| temperature() const | protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover | inline |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| ThermodynamicMover() | protocols::canonical_sampling::ThermodynamicMover | |
| torsion_id_ranges(core::pose::Pose &pose) override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | virtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~SidechainMoverBase() override | protocols::simple_moves::sidechain_moves::SidechainMoverBase | |
| ~ThermodynamicMover() override | protocols::canonical_sampling::ThermodynamicMover | |
1.8.7