#include <CutBiasClaim.hh>

Inheritance diagram for protocols::environment::claims::CutBiasClaim:

Public Member Functions
	CutBiasClaim (ClientMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap const &)

	CutBiasClaim (ClientMoverOP owner, std::string const &label, core::fragment::SecondaryStructure const &ss)

	CutBiasClaim (ClientMoverOP owner, std::string const &label, std::map< LocalPosition, core::Real > const &biases)

	CutBiasClaim (ClientMoverOP owner, std::string const &label, std::pair< core::Size, core::Size > const &range, core::Real bias)

void	yield_elements (FoldTreeSketch const &fts, CutBiasElements &elements) const override
	build and export the CutElements that represent the inclusion of a cut in the tree. More...

EnvClaimOP	clone () const override

std::string	type () const override

void	show (std::ostream &os) const override

Public Member Functions inherited from protocols::environment::claims::EnvClaim
	~EnvClaim () override
	Virtual destructor. More...

	EnvClaim (ClientMoverOP)

ClientMoverOP	owner () const
	A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag. More...

void	set_owner (ClientMoverOP owner)

void	annotate (core::pose::Pose const &, core::environment::SequenceAnnotationOP) const
	allow the claim to use any internally queued ResidueSelectors to create sequence annotations. More...

virtual void	yield_elements (FoldTreeSketch const &, ResidueElements &) const
	build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...

virtual void	yield_elements (FoldTreeSketch const &, JumpElements &) const
	build the JumpElements that represent the inclusion of a jump in the nascent FoldTree More...

virtual void	yield_elements (FoldTreeSketch const &, CutElements &) const
	build and export the CutElements that represent the inclusion of a cut in the tree. More...

virtual void	yield_elements (core::pose::Pose const &, DOFElements &) const
	build and export DOFElements, which represent control over non-jump dofs (torsions, bond lengths, angles) final conformation. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static std::string	class_name ()

Static Public Member Functions inherited from protocols::environment::claims::EnvClaim
static EnvClaimOP	make_claim (std::string const &name, ClientMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
	factory method for claims. More...

static bool	is_claim (std::string const &name)

static void	define_envclaim_schema_group (utility::tag::XMLSchemaDefinition &xsd)

static std::string	envclaim_ct_namer (std::string)

static std::string	envclaim_group_name ()

Private Types
typedef EnvClaim	Parent

typedef core::environment::FoldTreeSketch	FoldTreeSketch

typedef core::environment::LocalPosition	LocalPosition

Private Attributes
std::string	label_

std::map< LocalPosition, core::Real >	biases_

Additional Inherited Members
Protected Member Functions inherited from protocols::environment::claims::EnvClaim
virtual DOFElement	wrap_dof_id (core::id::DOF_ID const &id) const

ControlStrength	parse_ctrl_str (std::string const &str) const

void	queue_for_annotation (std::string const &label, ResidueSelectorCOP selector)

Member Typedef Documentation

typedef core::environment::FoldTreeSketch protocols::environment::claims::CutBiasClaim::FoldTreeSketch

private

typedef core::environment::LocalPosition protocols::environment::claims::CutBiasClaim::LocalPosition

private

typedef EnvClaim protocols::environment::claims::CutBiasClaim::Parent

private

Constructor & Destructor Documentation

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClientMoverOP	owner,
		utility::tag::TagCOP	tag,
		basic::datacache::DataMap const &	datamap
	)

References biases_, label_, protocols::environment::claims::EnvClaim::queue_for_annotation(), and protocols::sic_dock::range().

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClientMoverOP	owner,
		std::string const &	label,
		core::fragment::SecondaryStructure const &	ss
	)

References biases_, label_, core::fragment::SecondaryStructure::loop_fraction(), and core::fragment::SecondaryStructure::total_residue().

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClientMoverOP	owner,
		std::string const &	label,
		std::map< LocalPosition, core::Real > const &	biases
	)

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClientMoverOP	owner,
		std::string const &	label,
		std::pair< core::Size, core::Size > const &	range,
		core::Real	bias
	)