protocols::denovo_design::architects::MotifArchitect Class Reference

for planning arbitrary motifs More...

#include <MotifArchitect.hh>

Inheritance diagram for protocols::denovo_design::architects::MotifArchitect:

Public Types
typedef components::Segment	Motif
typedef components::SegmentOP	MotifOP
typedef components::SegmentCOP	MotifCOP
typedef utility::vector1 < MotifCOP >	MotifCOPs
Public Types inherited from protocols::denovo_design::architects::DeNovoArchitect
typedef components::StructureDataOP	StructureDataOP

Public Member Functions
	MotifArchitect (std::string const &id)
	~MotifArchitect () override
DeNovoArchitectOP	clone () const override
std::string	type () const override
	simply returns the name of this type of architect More...
components::StructureDataOP	design (core::pose::Pose const &pose, core::Real &random) const override
MotifCOPs::const_iterator	motifs_begin () const
	Returns iterator to the start of the list of possible motifs that could be used during design. More...
MotifCOPs::const_iterator	motifs_end () const
	Returns end iterator to the start of the list of possible motifs that could be used during design. More...
MotifCOPs const &	motifs () const
	Returns the list of possible motifs that could be used during design. More...
void	set_motifs (std::string const &motif_str)
	Sets the list of allowed motifs using a string. More...
void	set_motifs (MotifCOPs const &motifs)
	Sets the list of allowed motifs from a list of Motif objects. More...
Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
	DeNovoArchitect (std::string const &id)
	~DeNovoArchitect () override
components::StructureDataOP	apply (core::pose::Pose const &pose) const
Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
	StructureArchitect (std::string const &id)
	~StructureArchitect () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
std::string const &	id () const
void	set_id (std::string const &new_id)

Static Public Member Functions
static std::string	architect_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
Static Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
static void	add_common_denovo_architect_attributes (utility::tag::AttributeList &attlist)
Static Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
static void	attributes_for_parse_my_tag (utility::tag::AttributeList &attlist)

Protected Member Functions
void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
	Configuration by XML. More...

Private Attributes
MotifCOPs	motifs_

Additional Inherited Members
Static Public Attributes inherited from protocols::denovo_design::architects::DeNovoArchitect
static std::string const	DATA_MAP_NAME = "DeNovoArchitects"

Detailed Description

for planning arbitrary motifs

Member Typedef Documentation

typedef components::Segment protocols::denovo_design::architects::MotifArchitect::Motif

typedef components::SegmentCOP protocols::denovo_design::architects::MotifArchitect::MotifCOP

typedef utility::vector1< MotifCOP > protocols::denovo_design::architects::MotifArchitect::MotifCOPs

typedef components::SegmentOP protocols::denovo_design::architects::MotifArchitect::MotifOP

Constructor & Destructor Documentation

protocols::denovo_design::architects::MotifArchitect::MotifArchitect

(

std::string const &

id

)

protocols::denovo_design::architects::MotifArchitect::~MotifArchitect ( )

overridedefault

Member Function Documentation

static std::string protocols::denovo_design::architects::MotifArchitect::architect_name ( )

inlinestatic

Referenced by protocols::denovo_design::architects::MotifArchitectCreator::keyname(), provide_xml_schema(), and type().

DeNovoArchitectOP protocols::denovo_design::architects::MotifArchitect::clone ( ) const

overridevirtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

components::StructureDataOP protocols::denovo_design::architects::MotifArchitect::design ( core::pose::Pose const &  pose, core::Real &  random  ) const

overridevirtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

References protocols::denovo_design::extract_int(), protocols::denovo_design::architects::StructureArchitect::id(), motifs_, protocols::TR(), and type().

MotifArchitect::MotifCOPs const & protocols::denovo_design::architects::MotifArchitect::motifs

(

)

const

Returns the list of possible motifs that could be used during design.

References motifs_.

Referenced by set_motifs().

MotifArchitect::MotifCOPs::const_iterator protocols::denovo_design::architects::MotifArchitect::motifs_begin

(

)

const

Returns iterator to the start of the list of possible motifs that could be used during design.

References motifs_.

MotifArchitect::MotifCOPs::const_iterator protocols::denovo_design::architects::MotifArchitect::motifs_end

(

)

const

Returns end iterator to the start of the list of possible motifs that could be used during design.

References motifs_.

void protocols::denovo_design::architects::MotifArchitect::parse_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  )

overrideprotectedvirtual

Configuration by XML.

Implements protocols::denovo_design::architects::DeNovoArchitect.

References set_motifs().

void protocols::denovo_design::architects::MotifArchitect::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::denovo_design::architects::DeNovoArchitect::add_common_denovo_architect_attributes(), architect_name(), and protocols::denovo_design::architects::DeNovoArchitectFactory::xsd_architect_type_definition_w_attributes().

Referenced by protocols::denovo_design::architects::MotifArchitectCreator::provide_xml_schema().

void protocols::denovo_design::architects::MotifArchitect::set_motifs

(

std::string const &

motif_str

)

Sets the list of allowed motifs using a string.

Referenced by parse_tag().

void protocols::denovo_design::architects::MotifArchitect::set_motifs

(

MotifCOPs const &

motifs

)

Sets the list of allowed motifs from a list of Motif objects.

References motifs(), and motifs_.

std::string protocols::denovo_design::architects::MotifArchitect::type ( ) const

overridevirtual

simply returns the name of this type of architect

Implements protocols::denovo_design::architects::DeNovoArchitect.

References architect_name().

Referenced by design().

Member Data Documentation

MotifCOPs protocols::denovo_design::architects::MotifArchitect::motifs_

private

Referenced by design(), motifs(), motifs_begin(), motifs_end(), and set_motifs().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/architects/MotifArchitect.hh
• src/protocols/denovo_design/architects/MotifArchitect.cc