core::energy_methods::ScoreCache Class Reference

A cache of epitope scores (considered and commited) at each position, to enable efficient updating of only those scores affected by a substitution during annealing. More...

#include <MHCEpitopeEnergy.hh>

Inheritance diagram for core::energy_methods::ScoreCache:

Public Member Functions
	ScoreCache (int nres)
	Construct a cache for the given number of residues in a pose (residues will be maintained and passed by the ResidueArrayAnnealableEnergy machinery) More...
	ScoreCache (ScoreCache const &)
	~ScoreCache () override
ScoreCacheOP	clone () const

Public Attributes
utility::vector1< core::Real >	scores_
	Commited scores. More...
core::Size	considered_start_
	The range of residues affected by the currently considered substitution. More...
core::Size	considered_stop_
utility::vector1< core::Real >	considered_scores_
	Scores affected by the currently considered substitution. More...
utility::vector1< core::Real >	native_scores_
	Scores for the native pose, in case the score is relative rather than absolute. More...

Detailed Description

A cache of epitope scores (considered and commited) at each position, to enable efficient updating of only those scores affected by a substitution during annealing.

This is separated out into a class to parallel the core::scoring::mhc_epitope_energy::MHCEpitopeEnergySetup helpers, as each such instance will affect the score separately.

Constructor & Destructor Documentation

core::energy_methods::ScoreCache::ScoreCache

(

int

nres

)

Construct a cache for the given number of residues in a pose (residues will be maintained and passed by the ResidueArrayAnnealableEnergy machinery)

core::energy_methods::ScoreCache::ScoreCache

(

ScoreCache const &

src

)

core::energy_methods::ScoreCache::~ScoreCache ( )

overridedefault

Member Function Documentation

ScoreCacheOP core::energy_methods::ScoreCache::clone

(

)

const

Member Data Documentation

utility::vector1< core::Real > core::energy_methods::ScoreCache::considered_scores_

Scores affected by the currently considered substitution.

core::Size core::energy_methods::ScoreCache::considered_start_

The range of residues affected by the currently considered substitution.

core::Size core::energy_methods::ScoreCache::considered_stop_

utility::vector1< core::Real > core::energy_methods::ScoreCache::native_scores_

Scores for the native pose, in case the score is relative rather than absolute.

utility::vector1< core::Real > core::energy_methods::ScoreCache::scores_

Commited scores.

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The documentation for this class was generated from the following files:

• src/core/energy_methods/MHCEpitopeEnergy.hh
• src/core/energy_methods/MHCEpitopeEnergy.cc