core::pack::task::operation::RestrictYSDesign Class Reference

RestrictYSDesign restricts positions to a binary Tyr/Ser alphabet. More...

#include <TaskOperations.hh>

Inheritance diagram for core::pack::task::operation::RestrictYSDesign:

Public Types
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	RestrictYSDesign ()
	RestrictYSDesign (RestrictYSDesign const &src)
	RestrictYSDesign (utility::vector1< core::Size > const &resids)
	~RestrictYSDesign () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (pose::Pose const &, PackerTask &task) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	include_resid (core::Size const resid)
void	include_gly (bool const gly)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	parse_tag (TagCOP, DataMap &)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
utility::vector1< core::Size >	YSresids_
bool	gly_switch_

Detailed Description

RestrictYSDesign restricts positions to a binary Tyr/Ser alphabet.

Member Typedef Documentation

typedef TaskOperation core::pack::task::operation::RestrictYSDesign::parent

Constructor & Destructor Documentation

core::pack::task::operation::RestrictYSDesign::RestrictYSDesign

(

)

core::pack::task::operation::RestrictYSDesign::RestrictYSDesign

(

RestrictYSDesign const &

src

)

core::pack::task::operation::RestrictYSDesign::RestrictYSDesign

(

utility::vector1< core::Size > const &

resids

)

References gly_switch_, core::select::resids(), and YSresids_.

core::pack::task::operation::RestrictYSDesign::~RestrictYSDesign ( )

overridedefault

Member Function Documentation

void core::pack::task::operation::RestrictYSDesign::apply ( pose::Pose const &  , PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::chemical::aa_from_name(), gly_switch_, core::pack::task::PackerTask::nonconst_residue_task(), core::pack::task::ResidueLevelTask::restrict_absent_canonical_aas(), and YSresids_.

TaskOperationOP core::pack::task::operation::RestrictYSDesign::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

void core::pack::task::operation::RestrictYSDesign::include_gly

(

bool const

gly

)

References gly_switch_.

void core::pack::task::operation::RestrictYSDesign::include_resid

(

core::Size const

resid

)

References YSresids_.

std::string core::pack::task::operation::RestrictYSDesign::keyname ( )

static

Referenced by core::pack::task::operation::RestrictYSDesignCreator::keyname(), and provide_xml_schema().

void core::pack::task::operation::RestrictYSDesign::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_empty().

Referenced by core::pack::task::operation::RestrictYSDesignCreator::provide_xml_schema().

Member Data Documentation

bool core::pack::task::operation::RestrictYSDesign::gly_switch_

private

Referenced by apply(), include_gly(), and RestrictYSDesign().

utility::vector1< core::Size > core::pack::task::operation::RestrictYSDesign::YSresids_

private

Referenced by apply(), include_resid(), and RestrictYSDesign().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/TaskOperations.hh
• src/core/pack/task/operation/TaskOperations.cc