| allowed_deviation_for_turn_type_id_ | protocols::features::strand_assembly::SandwichFeatures | private |
| CB_b_factor_cutoff_for_electrostatic_interactions_ | protocols::features::strand_assembly::SandwichFeatures | private |
| chance_of_being_canonical_sw | protocols::features::strand_assembly::SandwichFeatures | private |
| check_canonicalness_cutoff_ | protocols::features::strand_assembly::SandwichFeatures | private |
| check_N_to_C_direction_by_ | protocols::features::strand_assembly::SandwichFeatures | private |
| check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1) const | protocols::features::FeaturesReporter | |
| check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const | protocols::features::FeaturesReporter | |
| check_relevant_residues(utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const | protocols::features::FeaturesReporter | |
| check_relevant_residues_range(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const | protocols::features::FeaturesReporter | |
| class_name() | protocols::features::strand_assembly::SandwichFeatures | static |
| count_AA_with_direction_ | protocols::features::strand_assembly::SandwichFeatures | private |
| delete_record(StructureID, utility::sql_database::sessionOP) | protocols::features::FeaturesReporter | inlinevirtual |
| delete_records_from_table(std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session) | protocols::features::FeaturesReporter | protected |
| distance_cutoff_for_electrostatic_interactions_ | protocols::features::strand_assembly::SandwichFeatures | private |
| do_not_connect_sheets_by_loops_ | protocols::features::strand_assembly::SandwichFeatures | private |
| do_not_write_resfile_of_sandwich_that_has_non_canonical_LR_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_desinated_pdbs_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_sandwich_that_has_near_backbone_atoms_between_sheets_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_sandwich_that_has_non_canonical_LR_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_sandwich_that_has_non_canonical_properties_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_sandwich_that_has_non_canonical_shortest_dis_between_facing_aro_in_sw_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_sandwich_that_is_linked_w_same_direction_strand_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_sandwich_that_is_suspected_to_have_not_facing_2_sheets_ | protocols::features::strand_assembly::SandwichFeatures | private |
| exclude_sandwich_with_SS_bond_ | protocols::features::strand_assembly::SandwichFeatures | private |
| extract_sandwich_ | protocols::features::strand_assembly::SandwichFeatures | private |
| features_reporter_dependencies() const override | protocols::features::strand_assembly::SandwichFeatures | virtual |
| FeaturesReporter() | protocols::features::FeaturesReporter | inline |
| find_tag(core::pose::Pose const &pose) const | protocols::features::FeaturesReporter | protected |
| generate_scorefxn(bool fullatom=false) | protocols::features::strand_assembly::SandwichFeatures | private |
| get_relevant_residues_mode() const | protocols::features::FeaturesReporter | |
| inter_sheet_distance_to_see_whether_a_sheet_is_surrounded_by_other_sheets_ | protocols::features::strand_assembly::SandwichFeatures | private |
| load_into_pose(utility::sql_database::sessionOP, StructureID, core::pose::Pose &) | protocols::features::FeaturesReporter | inlinevirtual |
| max_abs_inter_strand_dihedral_to_not_be_same_direction_strands_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_CA_CA_dis_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_E_in_extracted_sw_loop_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_ending_loop_size_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_H_in_extracted_sw_loop_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_inter_sheet_dis_CA_CA_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_inter_strand_angle_to_not_be_same_direction_strands_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_num_strands_to_deal_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_num_sw_per_pdb_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_sheet_angle_by_four_term_cen_res_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_sheet_angle_with_cen_res_in_smaller_sheet_and_two_terminal_res_in_larger_sheet_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_sheet_dis_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_sheet_torsion_cen_res_ | protocols::features::strand_assembly::SandwichFeatures | private |
| max_starting_loop_size_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_C_O_N_angle_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_CA_CA_dis_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_inter_sheet_dis_CA_CA_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_N_H_O_angle_between_two_sheets_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_N_O_dis_between_two_sheets_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_num_strands_in_sheet_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_num_strands_to_deal_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_primary_seq_distance_diff_for_electrostatic_interactions_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_res_in_strand_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_sheet_angle_by_four_term_cen_res_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_sheet_dis_ | protocols::features::strand_assembly::SandwichFeatures | private |
| min_sheet_torsion_cen_res_ | protocols::features::strand_assembly::SandwichFeatures | private |
| no_helix_in_pdb_ | protocols::features::strand_assembly::SandwichFeatures | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override | protocols::features::strand_assembly::SandwichFeatures | virtual |
| primary_seq_distance_cutoff_for_beta_sheet_capping_after_C_term_capping_ | protocols::features::strand_assembly::SandwichFeatures | private |
| primary_seq_distance_cutoff_for_beta_sheet_capping_after_N_term_capping_ | protocols::features::strand_assembly::SandwichFeatures | private |
| primary_seq_distance_cutoff_for_beta_sheet_capping_before_C_term_capping_ | protocols::features::strand_assembly::SandwichFeatures | private |
| primary_seq_distance_cutoff_for_beta_sheet_capping_before_N_term_capping_ | protocols::features::strand_assembly::SandwichFeatures | private |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::features::strand_assembly::SandwichFeatures | static |
| relevant_residues_mode_ | protocols::features::FeaturesReporter | protected |
| report_features(core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) override | protocols::features::strand_assembly::SandwichFeatures | virtual |
| protocols::features::FeaturesReporter::report_features(core::pose::Pose const &, StructureID, utility::sql_database::sessionOP) | protocols::features::FeaturesReporter | |
| SandwichFeatures() | protocols::features::strand_assembly::SandwichFeatures | |
| schema() const | protocols::features::FeaturesReporter | inlinevirtual |
| set_relevant_residues_mode(RelevantResiduesMode::T setting) | protocols::features::FeaturesReporter | |
| type_name() const override | protocols::features::strand_assembly::SandwichFeatures | virtual |
| unit_test_pass_identifier | protocols::features::strand_assembly::SandwichFeatures | private |
| write_AA_kind_files_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_all_info_files_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_beta_sheet_capping_info_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_chain_B_resnum_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_electrostatic_interactions_of_all_residues_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_electrostatic_interactions_of_all_residues_in_a_strand_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_electrostatic_interactions_of_surface_residues_in_a_strand_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_heading_directions_of_all_AA_in_a_strand_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_loop_AA_distribution_files_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_p_aa_pp_files_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_phi_psi_of_all_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_phi_psi_of_E_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_rama_at_AA_to_files_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_resfile_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_resfile_NOT_FWY_on_surface_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_resfile_to_minimize_too_many_core_heading_FWY_on_core_strands_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_resfile_to_minimize_too_many_core_heading_FWY_on_edge_strands_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_resfile_to_minimize_too_much_hydrophobic_surface_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_resfile_when_seq_rec_is_bad_ | protocols::features::strand_assembly::SandwichFeatures | private |
| write_schema_to_db(utility::sql_database::sessionOP db_session) const override | protocols::features::strand_assembly::SandwichFeatures | virtual |
| write_strand_AA_distribution_files_ | protocols::features::strand_assembly::SandwichFeatures | private |
| wt_for_pro_in_1st_inter_sheet_loop_ | protocols::features::strand_assembly::SandwichFeatures | private |
| wt_for_pro_in_3rd_inter_sheet_loop_ | protocols::features::strand_assembly::SandwichFeatures | private |
| wt_for_pro_in_starting_loop_ | protocols::features::strand_assembly::SandwichFeatures | private |
| ~FeaturesReporter() override | protocols::features::FeaturesReporter | |
| ~SandwichFeatures() override | protocols::features::strand_assembly::SandwichFeatures | |
1.8.7