| add_build_set(BuildSet const &build_set) | protocols::match::upstream::ProteinUpstreamBuilder | |
| atom_coordinate_unacceptable(core::Size build_set_id, core::conformation::Residue const &rescoords, core::Size atomno) const | protocols::match::upstream::ProteinUpstreamBuilder | private |
| avoid_building_any_rotamers_dueto_native_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
| bbgrid() const | protocols::match::upstream::UpstreamBuilder | inlineprotected |
| build(ScaffoldBuildPoint const &build_point) const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| build_set(core::chemical::ResidueTypeCOP restype) const | protocols::match::upstream::ProteinUpstreamBuilder | |
| build_set(core::chemical::ResidueTypeCOP restype) | protocols::match::upstream::ProteinUpstreamBuilder | |
| build_sets_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
| clone() const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| compatible(Hit const &my_hit, ScaffoldBuildPoint const &build_point_mine, UpstreamBuilder const &other, Hit const &other_hit, ScaffoldBuildPoint const &build_point_other, bool first_dispatch=true) const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| compatible(Hit const &my_hit, ScaffoldBuildPoint const &build_point_mine, ProteinUpstreamBuilder const &other, Hit const &other_hit, ScaffoldBuildPoint const &build_point_other, bool first_dispatch=true) const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| compute_cb_frame(core::Size build_set_id, ProteinBackboneBuildPoint const &build_point) const | protocols::match::upstream::ProteinUpstreamBuilder | private |
| DunbrackRotamerSampleData typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
| DunbrackRotamerSampleDataVector typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
| HTReal typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
| initialize_rescoords(core::Size build_set_id, core::conformation::Residue &rescoords, ScaffoldBuildPoint const &build_point) const | protocols::match::upstream::ProteinUpstreamBuilder | private |
| n_build_sets() const | protocols::match::upstream::ProteinUpstreamBuilder | inline |
| n_restypes_to_build() const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| ProteinUpstreamBuilder() | protocols::match::upstream::ProteinUpstreamBuilder | |
| Real typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
| recover_hit(Hit const &hit, ScaffoldBuildPoint const &build_point, UpstreamResidueProcessor &processor) const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| recover_hits(std::list< Hit >::const_iterator hits_begin, std::list< Hit >::const_iterator hits_end, ScaffoldBuildPoint const &build_point, UpstreamResidueProcessor &processor) const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| restype(core::Size which_restype) const override | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
| sampler_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
| set_bb_grid(BumpGridCOP bbgrid) | protocols::match::upstream::UpstreamBuilder | |
| set_native_flag(bool native) | protocols::match::upstream::ProteinUpstreamBuilder | |
| set_sampler(ProteinSCSamplerCOP sampler) | protocols::match::upstream::ProteinUpstreamBuilder | |
| set_use_input_sidechain(bool setting) | protocols::match::upstream::ProteinUpstreamBuilder | |
| Size typedef | protocols::match::upstream::UpstreamBuilder | |
| use_input_sc_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
| Vector typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
| ~ProteinUpstreamBuilder() override | protocols::match::upstream::ProteinUpstreamBuilder | |
| ~UpstreamBuilder() override | protocols::match::upstream::UpstreamBuilder | |