| calc_rmsd_to_native(Pose &pose) const | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| calc_score(Pose &pose) const | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| get_loops() const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| get_native_pose() const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| get_prefix() const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| get_score_function() const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| get_timer() const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| have_native_pose_ | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| init(LoopMover const *mover) | protocols::loop_modeling::utilities::TrajectoryLogger | |
| init(protocols::loops::LoopsCOP loops, core::scoring::ScoreFunctionCOP scorefxn) | protocols::loop_modeling::utilities::TrajectoryLogger | |
| loops_ | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| native_pose_ | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| prefix_ | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| record_endpoint(basic::Tracer &tr, Pose &pose) const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| record_move(basic::Tracer &tr, Pose &pose, core::Size const i, core::Size const j, core::Size const k, bool const proposed, bool const accepted) const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| record_move(basic::Tracer &tr, Pose &pose, core::Size const iteration, bool const proposed, bool const accepted) const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| record_new_pose(basic::Tracer &tr, Pose &pose) const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| record_new_score_function(basic::Tracer &tr, Pose &pose) const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| record_new_temperature(basic::Tracer &tr, Real temperature) const | protocols::loop_modeling::utilities::TrajectoryLogger | |
| reset_timer() | protocols::loop_modeling::utilities::TrajectoryLogger | |
| scorefxn_ | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| set_loops(protocols::loops::LoopsCOP) | protocols::loop_modeling::utilities::TrajectoryLogger | |
| set_native_pose(Pose const &) | protocols::loop_modeling::utilities::TrajectoryLogger | |
| set_prefix(string) | protocols::loop_modeling::utilities::TrajectoryLogger | |
| set_score_function(core::scoring::ScoreFunctionCOP) | protocols::loop_modeling::utilities::TrajectoryLogger | |
| start_time_ | protocols::loop_modeling::utilities::TrajectoryLogger | private |
| TrajectoryLogger(string const &prefix="") | protocols::loop_modeling::utilities::TrajectoryLogger | |
| TrajectoryLogger(LoopMover const *mover, string const &prefix="") | protocols::loop_modeling::utilities::TrajectoryLogger | |
| TrajectoryLogger(protocols::loops::LoopsCOP loops, core::scoring::ScoreFunctionCOP scorefxn, string const &prefix="") | protocols::loop_modeling::utilities::TrajectoryLogger | |
| unset_native_pose() | protocols::loop_modeling::utilities::TrajectoryLogger | |
1.8.7