ProlinePhiScore score counts identical residues. More...

#include <ProlinePhiScore.hh>

Inheritance diagram for protocols::frag_picker::scores::ProlinePhiScore:

Public Member Functions
	ProlinePhiScore (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string &fastaQueryDisulfide)

bool	score (FragmentCandidateOP f, FragmentScoreMapOP empty_map) override

bool	describe_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out)
	prints a detailed explanation how a fragment score has been computed More...

Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)

std::string &	get_score_name ()
	Returns a name of this scoring method. More...

core::Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...

void	set_id (core::Size id)
	Sets a new integer index for this scoring method. More...

core::Size	get_priority ()
	Returns a priority of this scoring method. More...

core::Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...

bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...

void	set_min_allowed_score (core::Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Static Public Attributes
static const int	REWARD = 0
	will be added if the two residues are identical More...

static const int	PENALTY = 1
	will be added if the two residues are NOT identical More...

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
core::Size	id_

core::Size	priority_

std::string	name_

core::Real	lowest_acceptable_value_

bool	use_lowest_

Detailed Description

ProlinePhiScore score counts identical residues.

Resulting score is the number of identical residues on corresponding positions in a vall fragment and a query sequence

Constructor & Destructor Documentation

protocols::frag_picker::scores::ProlinePhiScore::ProlinePhiScore	(	core::Size	priority,
		core::Real	lowest_acceptable_value,
		bool	use_lowest,
		std::string &	fastaQueryDisulfide
	)

inline

bool protocols::frag_picker::scores::ProlinePhiScore::describe_score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map,
		std::ostream &	out
	)

prints a detailed explanation how a fragment score has been computed

besides extensive output, the method should return the same result as score()

bool protocols::frag_picker::scores::ProlinePhiScore::score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)

overridevirtual

const int protocols::frag_picker::scores::ProlinePhiScore::PENALTY = 1

static

will be added if the two residues are NOT identical

std::string& protocols::frag_picker::scores::ProlinePhiScore::query_

private

const int protocols::frag_picker::scores::ProlinePhiScore::REWARD = 0

static

will be added if the two residues are identical

The documentation for this class was generated from the following files: