PeptideCyclizeMover.cc File Reference

Adds all the required constraints and bonds to cyclize a pose. More...

#include <core/id/AtomID.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/PDBInfo.hh>
#include <core/types.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/select/util.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/func/FuncFactory.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/func/Func.hh>
#include <core/pose/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/cyclic_peptide/CreateAngleConstraint.fwd.hh>
#include <protocols/cyclic_peptide/CreateAngleConstraint.hh>
#include <protocols/cyclic_peptide/CreateDistanceConstraint.fwd.hh>
#include <protocols/cyclic_peptide/CreateDistanceConstraint.hh>
#include <protocols/cyclic_peptide/CreateTorsionConstraint.fwd.hh>
#include <protocols/cyclic_peptide/CreateTorsionConstraint.hh>
#include <protocols/cyclic_peptide/DeclareBond.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <numeric/constants.hh>
#include <numeric/xyzVector.hh>
#include <utility/tag/Tag.fwd.hh>
#include <utility/tag/XMLSchemaGeneration.fwd.hh>
#include <utility/vector1.hh>
#include <utility/tag/Tag.hh>
#include <protocols/cyclic_peptide/PeptideCyclizeMover.hh>
#include <protocols/cyclic_peptide/PeptideCyclizeMoverCreator.hh>
#include <basic/Tracer.hh>
#include <cstdio>
#include <iostream>
#include <cmath>
#include <sstream>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::cyclic_peptide

Functions
static basic::Tracer	TR ("protocols.cyclic_peptide.PeptideCyclizeMover")
std::string	protocols::cyclic_peptide::subtag_for_cyclize (std::string const &foo)

Detailed Description

Adds all the required constraints and bonds to cyclize a pose.

Author

Parisa Hosseinzadeh (paris.nosp@m.ah@u.nosp@m.w.edu)

Function Documentation

static basic::Tracer TR ( "protocols.cyclic_peptide.PeptideCyclizeMover"  )

static