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protocols::task_operations::SeqprofConsensusOperation Member List

This is the complete list of members for protocols::task_operations::SeqprofConsensusOperation, including all inherited members.

aa_occurrence_filter(utility::vector1< Real > const &pos_occurance, core::Real const pos_min_occurance, utility::vector1< bool > &keep_aas)protocols::task_operations::SeqprofConsensusOperationstatic
aa_probability_filter(Pose const &pose, utility::vector1< Real > const &pos_profile, core::Real const position_min_prob, core::Size const aa_idx, utility::vector1< bool > &keep_aas) const protocols::task_operations::SeqprofConsensusOperation
apply(Pose const &pose, PackerTask &task) const overrideprotocols::task_operations::SeqprofConsensusOperationvirtual
chain_num() const protocols::task_operations::SeqprofConsensusOperationinline
chain_num(core::Size const d)protocols::task_operations::SeqprofConsensusOperationinline
chain_num_protocols::task_operations::SeqprofConsensusOperationprivate
clone() const overrideprotocols::task_operations::SeqprofConsensusOperationvirtual
conservation_cutoff_aligned_segments() const protocols::task_operations::SeqprofConsensusOperationinline
conservation_cutoff_aligned_segments(core::Real const c)protocols::task_operations::SeqprofConsensusOperationinline
conservation_cutoff_aligned_segments_protocols::task_operations::SeqprofConsensusOperationprivate
conservation_cutoff_protein_interface_design() const protocols::task_operations::SeqprofConsensusOperationinline
conservation_cutoff_protein_interface_design(core::Real const c)protocols::task_operations::SeqprofConsensusOperationinline
conservation_cutoff_protein_interface_design_protocols::task_operations::SeqprofConsensusOperationprivate
convert_scores_to_probabilities(bool const c)protocols::task_operations::SeqprofConsensusOperationinline
convert_scores_to_probabilities() const protocols::task_operations::SeqprofConsensusOperationinline
convert_scores_to_probabilities_protocols::task_operations::SeqprofConsensusOperationprivate
create_complex_type_generator(utility::tag::XMLSchemaDefinition &xsd)protocols::task_operations::SeqprofConsensusOperationstatic
DataMap typedefcore::pack::task::operation::TaskOperation
debug(bool const b)protocols::task_operations::SeqprofConsensusOperationinline
debug() const protocols::task_operations::SeqprofConsensusOperationinline
debug_protocols::task_operations::SeqprofConsensusOperationprivate
ignore_pose_profile_length_mismatch_protocols::task_operations::SeqprofConsensusOperationprivate
keep_native() const protocols::task_operations::SeqprofConsensusOperationinline
keep_native(bool const b)protocols::task_operations::SeqprofConsensusOperationinline
keep_native_protocols::task_operations::SeqprofConsensusOperationprivate
keyname()protocols::task_operations::SeqprofConsensusOperationinlinestatic
min_aa_probability_protocols::task_operations::SeqprofConsensusOperationprivate
PackerTask typedefprotocols::task_operations::SeqprofConsensusOperation
parent typedefprotocols::task_operations::SeqprofConsensusOperation
parse_profile_from_pose(Pose const &pose) const protocols::task_operations::SeqprofConsensusOperation
parse_tag(TagCOP tag, DataMap &) overrideprotocols::task_operations::SeqprofConsensusOperationvirtual
Pose typedefprotocols::task_operations::SeqprofConsensusOperation
prob_larger_current_protocols::task_operations::SeqprofConsensusOperationprivate
protein_interface_design() const protocols::task_operations::SeqprofConsensusOperation
protein_interface_design(ProteinInterfaceDesignOperationOP pido)protocols::task_operations::SeqprofConsensusOperation
protein_interface_design_protocols::task_operations::SeqprofConsensusOperationprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) const core::pack::task::operation::TaskOperationvirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::task_operations::SeqprofConsensusOperationstatic
Real typedefprotocols::task_operations::SeqprofConsensusOperation
restrict_to_aligned_segments() const protocols::task_operations::SeqprofConsensusOperation
restrict_to_aligned_segments(RestrictToAlignedSegmentsOperationOP rtas)protocols::task_operations::SeqprofConsensusOperation
restrict_to_aligned_segments_protocols::task_operations::SeqprofConsensusOperationprivate
restrict_to_repacking_protocols::task_operations::SeqprofConsensusOperationprivate
seqprof() const protocols::task_operations::SeqprofConsensusOperation
seqprof_protocols::task_operations::SeqprofConsensusOperationprivate
seqprof_filename_protocols::task_operations::SeqprofConsensusOperationprivate
SeqprofConsensusOperation()protocols::task_operations::SeqprofConsensusOperation
set_ignore_pose_profile_length_mismatch(bool const setting)protocols::task_operations::SeqprofConsensusOperationinline
set_seqprof(core::sequence::SequenceProfileOP seqprof, bool reweight=false)protocols::task_operations::SeqprofConsensusOperation
String typedefprotocols::task_operations::SeqprofConsensusOperation
TagCOP typedefprotocols::task_operations::SeqprofConsensusOperation
TaskOperation typedefprotocols::task_operations::SeqprofConsensusOperation
TaskOperationOP typedefprotocols::task_operations::SeqprofConsensusOperation
use_occurrence_data() const protocols::task_operations::SeqprofConsensusOperationinline
use_occurrence_data(bool const b)protocols::task_operations::SeqprofConsensusOperationinline
use_occurrence_data_protocols::task_operations::SeqprofConsensusOperationprivate
~SeqprofConsensusOperation() overrideprotocols::task_operations::SeqprofConsensusOperation
~TaskOperation() overridecore::pack::task::operation::TaskOperation