protocols::task_operations::SeqprofConsensusOperation Member List

This is the complete list of members for protocols::task_operations::SeqprofConsensusOperation, including all inherited members.

aa_occurrence_filter(utility::vector1< Real > const &pos_occurance, core::Real const pos_min_occurance, utility::vector1< bool > &keep_aas)	protocols::task_operations::SeqprofConsensusOperation	static
aa_probability_filter(Pose const &pose, utility::vector1< Real > const &pos_profile, core::Real const position_min_prob, core::Size const aa_idx, utility::vector1< bool > &keep_aas) const	protocols::task_operations::SeqprofConsensusOperation
apply(Pose const &pose, PackerTask &task) const override	protocols::task_operations::SeqprofConsensusOperation	virtual
chain_num() const	protocols::task_operations::SeqprofConsensusOperation	inline
chain_num(core::Size const d)	protocols::task_operations::SeqprofConsensusOperation	inline
chain_num_	protocols::task_operations::SeqprofConsensusOperation	private
clone() const override	protocols::task_operations::SeqprofConsensusOperation	virtual
conservation_cutoff_aligned_segments() const	protocols::task_operations::SeqprofConsensusOperation	inline
conservation_cutoff_aligned_segments(core::Real const c)	protocols::task_operations::SeqprofConsensusOperation	inline
conservation_cutoff_aligned_segments_	protocols::task_operations::SeqprofConsensusOperation	private
conservation_cutoff_protein_interface_design() const	protocols::task_operations::SeqprofConsensusOperation	inline
conservation_cutoff_protein_interface_design(core::Real const c)	protocols::task_operations::SeqprofConsensusOperation	inline
conservation_cutoff_protein_interface_design_	protocols::task_operations::SeqprofConsensusOperation	private
convert_scores_to_probabilities(bool const c)	protocols::task_operations::SeqprofConsensusOperation	inline
convert_scores_to_probabilities() const	protocols::task_operations::SeqprofConsensusOperation	inline
convert_scores_to_probabilities_	protocols::task_operations::SeqprofConsensusOperation	private
create_complex_type_generator(utility::tag::XMLSchemaDefinition &xsd)	protocols::task_operations::SeqprofConsensusOperation	static
DataMap typedef	core::pack::task::operation::TaskOperation
debug(bool const b)	protocols::task_operations::SeqprofConsensusOperation	inline
debug() const	protocols::task_operations::SeqprofConsensusOperation	inline
debug_	protocols::task_operations::SeqprofConsensusOperation	private
ignore_pose_profile_length_mismatch_	protocols::task_operations::SeqprofConsensusOperation	private
keep_native() const	protocols::task_operations::SeqprofConsensusOperation	inline
keep_native(bool const b)	protocols::task_operations::SeqprofConsensusOperation	inline
keep_native_	protocols::task_operations::SeqprofConsensusOperation	private
keyname()	protocols::task_operations::SeqprofConsensusOperation	inlinestatic
min_aa_probability_	protocols::task_operations::SeqprofConsensusOperation	private
PackerTask typedef	protocols::task_operations::SeqprofConsensusOperation
parent typedef	protocols::task_operations::SeqprofConsensusOperation
parse_profile_from_pose(Pose const &pose) const	protocols::task_operations::SeqprofConsensusOperation
parse_tag(TagCOP tag, DataMap &) override	protocols::task_operations::SeqprofConsensusOperation	virtual
Pose typedef	protocols::task_operations::SeqprofConsensusOperation
prob_larger_current_	protocols::task_operations::SeqprofConsensusOperation	private
protein_interface_design() const	protocols::task_operations::SeqprofConsensusOperation
protein_interface_design(ProteinInterfaceDesignOperationOP pido)	protocols::task_operations::SeqprofConsensusOperation
protein_interface_design_	protocols::task_operations::SeqprofConsensusOperation	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	core::pack::task::operation::TaskOperation	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::task_operations::SeqprofConsensusOperation	static
Real typedef	protocols::task_operations::SeqprofConsensusOperation
restrict_to_aligned_segments() const	protocols::task_operations::SeqprofConsensusOperation
restrict_to_aligned_segments(RestrictToAlignedSegmentsOperationOP rtas)	protocols::task_operations::SeqprofConsensusOperation
restrict_to_aligned_segments_	protocols::task_operations::SeqprofConsensusOperation	private
restrict_to_repacking_	protocols::task_operations::SeqprofConsensusOperation	private
seqprof() const	protocols::task_operations::SeqprofConsensusOperation
seqprof_	protocols::task_operations::SeqprofConsensusOperation	private
seqprof_filename_	protocols::task_operations::SeqprofConsensusOperation	private
SeqprofConsensusOperation()	protocols::task_operations::SeqprofConsensusOperation
set_ignore_pose_profile_length_mismatch(bool const setting)	protocols::task_operations::SeqprofConsensusOperation	inline
set_seqprof(core::sequence::SequenceProfileOP seqprof, bool reweight=false)	protocols::task_operations::SeqprofConsensusOperation
String typedef	protocols::task_operations::SeqprofConsensusOperation
TagCOP typedef	protocols::task_operations::SeqprofConsensusOperation
TaskOperation typedef	protocols::task_operations::SeqprofConsensusOperation
TaskOperationOP typedef	protocols::task_operations::SeqprofConsensusOperation
use_occurrence_data() const	protocols::task_operations::SeqprofConsensusOperation	inline
use_occurrence_data(bool const b)	protocols::task_operations::SeqprofConsensusOperation	inline
use_occurrence_data_	protocols::task_operations::SeqprofConsensusOperation	private
~SeqprofConsensusOperation() override	protocols::task_operations::SeqprofConsensusOperation
~TaskOperation() override	core::pack::task::operation::TaskOperation