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protocols::jd3::full_model::FullModelJobQueen Member List

This is the complete list of members for protocols::jd3::full_model::FullModelJobQueen, including all inherited members.

add_option(utility::options::OptionKey const &key)protocols::jd3::full_model::FullModelJobQueenprotected
add_options(utility::options::OptionKeyList const &opts)protocols::jd3::full_model::FullModelJobQueenprotected
all_jobs_assigned_for_preliminary_job_node(core::Size node_id) const protocols::jd3::full_model::FullModelJobQueenprotected
allow_full_model_inputter(full_model_inputters::FullModelInputterCreatorOP creator)protocols::jd3::full_model::FullModelJobQueenprotected
allow_pose_outputter(pose_outputters::PoseOutputterCreatorOP creator)protocols::jd3::full_model::FullModelJobQueenprotected
append_common_tag_subelements(utility::tag::XMLSchemaDefinition &xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen) const protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
append_job_tag_subelements(utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen) const protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
assign_output_index(protocols::jd3::LarvalJobCOP larval_job, ResultIndex result_index_for_job, core::Size n_results_for_job, JobOutputIndex &output_index)protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
build_output_index(protocols::jd3::LarvalJobCOP larval_job, ResultIndex result_index_for_job, core::Size n_results_for_job)protocols::jd3::full_model::FullModelJobQueenprotected
cl_outputters_protocols::jd3::full_model::FullModelJobQueenprivate
common_block_tags() const protocols::jd3::full_model::FullModelJobQueenprotected
common_block_tags_protocols::jd3::full_model::FullModelJobQueenprivate
complete_larval_job_maturation(protocols::jd3::LarvalJobCOP larval_job, utility::options::OptionCollectionCOP job_options, utility::vector1< JobResultCOP > const &input_job_results)=0protocols::jd3::full_model::FullModelJobQueenprotectedpure virtual
completed_job_summary(LarvalJobCOP job, ResultIndex result_index, JobSummaryOP summary) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
completed_jobs() const protocols::jd3::full_model::FullModelJobQueenprotected
concatenate_all_options() const protocols::jd3::full_model::FullModelJobQueenprivate
create_and_set_initial_job_dag()protocols::jd3::JobQueen
create_and_store_output_specification_for_job_result(LarvalJobCOP job, ResultIndex result_index, core::Size nresults)protocols::jd3::full_model::FullModelJobQueenprotected
create_and_store_output_specification_for_job_result(LarvalJobCOP job, utility::options::OptionCollection const &job_options, ResultIndex result_index, core::Size nresults)protocols::jd3::full_model::FullModelJobQueenprotected
create_initial_job_dag() overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
create_output_specification_for_job_result(LarvalJobCOP job, utility::options::OptionCollection const &job_options, ResultIndex result_index, core::Size nresults)protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
curr_inner_larval_job_index_protocols::jd3::full_model::FullModelJobQueenprivate
deallocation_messages() overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
default_outputter_creator_protocols::jd3::full_model::FullModelJobQueenprivate
derived_process_deallocation_message(deallocation::DeallocationMessageOP message)protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
determine_job_list(JobDAGNodeID job_dag_node_index, core::Size max_njobs) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
determine_job_list_and_track(JobDAGNodeID job_dag_node_index, core::Size max_njobs)protocols::jd3::JobQueen
determine_preliminary_job_list()protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
determine_preliminary_job_list_from_command_line()protocols::jd3::full_model::FullModelJobQueenprivate
determine_preliminary_job_list_from_xml_file(std::string const &job_def_string)protocols::jd3::full_model::FullModelJobQueen
determine_preliminary_job_list_from_xml_file(std::string const &job_def_string, std::string const &job_def_schema)protocols::jd3::full_model::FullModelJobQueenprivate
do_not_accept_all_full_model_inputters_from_factory()protocols::jd3::full_model::FullModelJobQueenprotected
do_not_accept_all_pose_outputters_from_factory()protocols::jd3::full_model::FullModelJobQueenprotected
expand_job_list(FullModelInnerLarvalJobOP inner_job, core::Size max_larval_jobs_to_create)protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
failed_jobs() const protocols::jd3::full_model::FullModelJobQueenprotected
flush() overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
full_model_inputter_for_job(FullModelInnerLarvalJob const &inner_job) const protocols::jd3::full_model::FullModelJobQueenprotected
FullModelJobQueen()protocols::jd3::full_model::FullModelJobQueen
get_job_graph() const protocols::jd3::JobQueenprotected
get_job_tracker()protocols::jd3::JobQueenprotected
get_job_tracker() const protocols::jd3::JobQueenprotected
get_outputter_from_job_tag(utility::tag::TagCOP tag) const protocols::jd3::full_model::FullModelJobQueenprivate
get_preliminary_larval_jobs() const protocols::jd3::full_model::FullModelJobQueenprotected
has_job_previously_been_output(protocols::jd3::LarvalJobCOP job) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
inner_larval_jobs_for_curr_prelim_job_protocols::jd3::full_model::FullModelJobQueenprivate
input_pose_counter_protocols::jd3::full_model::FullModelJobQueenprivate
input_pose_index_map_protocols::jd3::full_model::FullModelJobQueenprivate
inputter_creator_list_protocols::jd3::full_model::FullModelJobQueenprivate
inputter_creators_protocols::jd3::full_model::FullModelJobQueenprivate
inputter_options_protocols::jd3::full_model::FullModelJobQueenprivate
job_def_complex_type_name(std::string const &type)protocols::jd3::full_model::FullModelJobQueenstatic
job_definition_file_tags_protocols::jd3::full_model::FullModelJobQueenprivate
job_definition_xsd() const overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
job_graph_protocols::jd3::full_model::FullModelJobQueenprivate
job_results_that_should_be_discarded() overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
JobQueen()protocols::jd3::JobQueen
jobs_that_should_be_output() overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
larval_job_counter_protocols::jd3::full_model::FullModelJobQueenprivate
last_job_for_input_pose_protocols::jd3::full_model::FullModelJobQueenprivate
load_job_definition_file(std::string const &job_def_string, std::string const &job_def_schema)protocols::jd3::full_model::FullModelJobQueenprivate
mature_larval_job(protocols::jd3::LarvalJobCOP job, utility::vector1< JobResultCOP > const &input_job_results) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
next_batch_of_larval_jobs_from_prelim(PrelimJobNodeID job_node_index, core::Size max_njobs)protocols::jd3::full_model::FullModelJobQueenprivate
njobs_made_for_curr_inner_larval_job_protocols::jd3::full_model::FullModelJobQueenprivate
note_job_completed(LarvalJobCOP job, JobStatus status, core::Size nresults) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
note_job_completed_and_track(LarvalJobCOP job, JobStatus status, core::Size nresults)protocols::jd3::JobQueen
nstruct_for_job(utility::tag::TagCOP job_tag) const protocols::jd3::full_model::FullModelJobQueenprotected
options_protocols::jd3::full_model::FullModelJobQueenprivate
options_for_job(FullModelInnerLarvalJob const &inner_job) const protocols::jd3::full_model::FullModelJobQueenprotected
options_from_tag(utility::tag::TagCOP job_options_tags) const protocols::jd3::full_model::FullModelJobQueenprotected
outputter_creator_list_protocols::jd3::full_model::FullModelJobQueenprivate
outputter_creators_protocols::jd3::full_model::FullModelJobQueenprivate
outputter_options_protocols::jd3::full_model::FullModelJobQueenprivate
override_default_outputter_protocols::jd3::full_model::FullModelJobQueenprivate
pjn_job_ind_begin_protocols::jd3::full_model::FullModelJobQueenprivate
pjn_job_ind_end_protocols::jd3::full_model::FullModelJobQueenprivate
pose_for_job(LarvalJobCOP job, utility::options::OptionCollection const &options)protocols::jd3::full_model::FullModelJobQueenprotected
pose_outputter_for_job(FullModelInnerLarvalJob const &innerJob)protocols::jd3::full_model::FullModelJobQueenprotected
pose_outputter_for_job(FullModelInnerLarvalJob const &innerJob, utility::options::OptionCollection const &job_options)protocols::jd3::full_model::FullModelJobQueenprotected
pose_outputter_for_job(pose_outputters::PoseOutputSpecification const &spec)protocols::jd3::full_model::FullModelJobQueenprotected
pose_outputter_map_protocols::jd3::full_model::FullModelJobQueenprivate
pose_outputters_protocols::jd3::full_model::FullModelJobQueenprivate
PoseOutputterMap typedefprotocols::jd3::full_model::FullModelJobQueenprivate
preliminary_job_node_inds_protocols::jd3::full_model::FullModelJobQueenprivate
preliminary_job_nodes() const protocols::jd3::full_model::FullModelJobQueenprotected
preliminary_job_nodes_complete_protocols::jd3::full_model::FullModelJobQueenprivate
preliminary_larval_jobs_protocols::jd3::full_model::FullModelJobQueenprivate
preliminary_larval_jobs_determined_protocols::jd3::full_model::FullModelJobQueenprivate
process_deallocation_message(deallocation::DeallocationMessageOP message) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
processed_jobs() const protocols::jd3::full_model::FullModelJobQueenprotected
recent_successes_protocols::jd3::full_model::FullModelJobQueenprivate
refine_preliminary_job(FullModelPreliminaryLarvalJob const &prelim_job)protocols::jd3::full_model::FullModelJobQueenprotectedvirtual
remove_default_input_element()protocols::jd3::full_model::FullModelJobQueenprotected
representative_pose_outputter_map_protocols::jd3::full_model::FullModelJobQueenprivate
representative_secondary_outputter_map_protocols::jd3::full_model::FullModelJobQueenprivate
RepresentativeOutputterMap typedefprotocols::jd3::full_model::FullModelJobQueenprivate
required_initialization_performed_protocols::jd3::full_model::FullModelJobQueenprivate
resource_definition_xsd() const overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
result_outputter(output::OutputSpecification const &spec) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
secondary_outputter_for_job(FullModelInnerLarvalJob const &inner_job, utility::options::OptionCollection const &job_options, std::string const &secondary_outputter_type)protocols::jd3::full_model::FullModelJobQueenprivate
secondary_outputter_for_job(pose_outputters::PoseOutputSpecification const &)protocols::jd3::full_model::FullModelJobQueenprivate
secondary_outputter_map_protocols::jd3::full_model::FullModelJobQueenprivate
secondary_outputter_options_protocols::jd3::full_model::FullModelJobQueenprivate
secondary_outputters_for_job(FullModelInnerLarvalJob const &innerJob, utility::options::OptionCollection const &job_options)protocols::jd3::full_model::FullModelJobQueenprotected
SecondaryOutputterMap typedefprotocols::jd3::full_model::FullModelJobQueenprivate
SecondaryRepresentativeOutputterMap typedefprotocols::jd3::full_model::FullModelJobQueenprivate
set_default_outputter(pose_outputters::PoseOutputterCreatorOP creator)protocols::jd3::full_model::FullModelJobQueenprotected
successful_jobs() const protocols::jd3::full_model::FullModelJobQueenprotected
update_job_dag(JobDigraphUpdater &updater) overrideprotocols::jd3::full_model::FullModelJobQueenvirtual
use_factory_provided_full_model_inputters_protocols::jd3::full_model::FullModelJobQueenprivate
use_factory_provided_pose_outputters_protocols::jd3::full_model::FullModelJobQueenprivate
~FullModelJobQueen() overrideprotocols::jd3::full_model::FullModelJobQueen
~JobQueen() overrideprotocols::jd3::JobQueen
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