SlidingWindowLoopClosure.cc File Reference

#include <protocols/loops/loop_closure/ccd/SlidingWindowLoopClosure.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loop_closure/ccd/CCDLoopClosureMover.hh>
#include <protocols/loops/loop_closure/ccd/LoopClosure.hh>
#include <protocols/loops/loop_closure/ccd/ShortLoopClosure.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/Exceptions.hh>
#include <protocols/evaluation/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameList.hh>
#include <core/fragment/FrameIteratorWorker_.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragCache.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/fast_loops.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>
#include <utility>
#include <utility/io/ozstream.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FrameIterator.hh>
#include <protocols/constraints_additional/ConstraintEvaluator.hh>
#include <utility/vector1.hh>
#include <protocols/jobdist/Jobs.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::loops
	protocols::loops::loop_closure
	protocols::loops::loop_closure::ccd

Functions
static basic::Tracer	protocols::loops::loop_closure::ccd::tr ("protocols.loops.loop_closure.ccd.SlidingWindowLoopClosure")
std::string const	protocols::loops::loop_closure::ccd::VDW_FRAG_STORE ("closure_loop_vdw")
std::string const	protocols::loops::loop_closure::ccd::SCORE_FRAG_STORE ("closure_loop_score")
std::string const	protocols::loops::loop_closure::ccd::RMSD_FRAG_STORE ("closure_loop_rmsd")
const Real	protocols::loops::loop_closure::ccd::REALLY_BAD_SCORE (1000000000.0)

Detailed Description

Author

Oliver Lange