SegmentSequenceProfile.cc File Reference

Generate lookup-based sequence profiles for contiguous structureal elements. More...

#include <vector>
#include <numeric>
#include <boost/range/combine.hpp>
#include <boost/range/algorithm.hpp>
#include <boost/range/adaptors.hpp>
#include <boost/range.hpp>
#include <utility/backtrace.hh>
#include <utility/exit.hh>
#include <json.hpp>
#include <basic/Tracer.hh>
#include <numeric/alignment/rmsd_calc.hh>
#include <core/pose/xyzStripeHashPose.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/id/types.hh>
#include <core/conformation/Residue.hh>
#include <protocols/indexed_structure_store/Datatypes.hh>
#include <protocols/indexed_structure_store/Datatypes.json.hh>
#include <protocols/indexed_structure_store/StructureStore.hh>
#include <protocols/indexed_structure_store/search/QueryDatabase.hh>
#include <protocols/indexed_structure_store/search/QueryDatabase.json.hh>
#include <protocols/indexed_structure_store/utility.hh>
#include <protocols/indexed_structure_store/orient_array.hh>
#include <protocols/indexed_structure_store/pose_utility.hh>
#include <protocols/indexed_structure_store/vector_tools.hh>
#include <protocols/indexed_structure_store/SegmentSequenceProfile.hh>
#include <protocols/indexed_structure_store/SegmentSequenceProfile.json.hh>
#include <boost/range/irange.hpp>
#include "ndarray.h"
#include "ndarray/eigen.h"

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::indexed_structure_store

Macros
#define	eigen_assert(x)   runtime_assert(x)

Functions
static basic::Tracer	TR ("protocols.indexed_structure_store.SegmentSequenceProfile")

Detailed Description

Generate lookup-based sequence profiles for contiguous structureal elements.

Author

Alex Ford (forda.nosp@m.s@uw.nosp@m..edu)

Macro Definition Documentation

#define eigen_assert

(

x

)

runtime_assert(x)

Function Documentation

static basic::Tracer TR ( "protocols.indexed_structure_store.SegmentSequenceProfile"  )

static