protocols::hbnet::HBNetScore Class Reference

#include <HBNetScore.hh>

Inheritance diagram for protocols::hbnet::HBNetScore:

Public Member Functions
	HBNetScore ()
	HBNetScore (protocols::filters::Filter const &)
	HBNetScore (HBNetScore const &)
	~HBNetScore () override
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
void	report (std::ostream &, core::pose::Pose const &) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	just returns get_score() More...
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
core::Real	score (core::pose::Pose &pose) override
	just returns get_score() More...
core::Real	get_score (core::pose::Pose &pose) const
std::string	name () const override
void	clear () override
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	threshold_
core::Real	hbond_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::hbnet::HBNetScore::HBNetScore

(

)

References name(), and protocols::filters::Filter::scorename_.

protocols::hbnet::HBNetScore::HBNetScore

(

protocols::filters::Filter const &

src

)

protocols::hbnet::HBNetScore::HBNetScore

(

HBNetScore const &

src

)

References name(), and protocols::filters::Filter::scorename_.

protocols::hbnet::HBNetScore::~HBNetScore ( )

overridedefault

Member Function Documentation

bool protocols::hbnet::HBNetScore::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References report_sm(), and threshold_.

void protocols::hbnet::HBNetScore::clear ( )

inlineoverridevirtual

used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual

Reimplemented from protocols::filters::Filter.

References hbond_threshold_, and threshold_.

protocols::filters::FilterOP protocols::hbnet::HBNetScore::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

Referenced by report_sm().

protocols::filters::FilterOP protocols::hbnet::HBNetScore::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

core::Real protocols::hbnet::HBNetScore::get_score

(

core::pose::Pose &

pose

)

const

References core::select::residue_selector::ResiduePDBInfoHasLabelSelector::apply(), protocols::simple_filters::BuriedUnsatHbondFilter::compute(), core::scoring::hbond, hbond_threshold_, and core::pose::Pose::size().

Referenced by report_sm(), and score().

std::string protocols::hbnet::HBNetScore::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

Referenced by HBNetScore().

void protocols::hbnet::HBNetScore::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References hbond_threshold_, and threshold_.

void protocols::hbnet::HBNetScore::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::hbnet::HBNetScoreFilterCreator::provide_xml_schema().

void protocols::hbnet::HBNetScore::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References report_sm().

core::Real protocols::hbnet::HBNetScore::report_sm ( core::pose::Pose const &  pose ) const

inlineoverridevirtual

just returns get_score()

Reimplemented from protocols::filters::Filter.

References clone(), core::pose::Pose::clone(), and get_score().

Referenced by apply(), and report().

core::Real protocols::hbnet::HBNetScore::score ( core::pose::Pose &  pose )

inlineoverridevirtual

just returns get_score()

Reimplemented from protocols::filters::Filter.

References get_score().

Member Data Documentation

core::Real protocols::hbnet::HBNetScore::hbond_threshold_

private

Referenced by clear(), get_score(), and parse_my_tag().

core::Real protocols::hbnet::HBNetScore::threshold_

private

Referenced by apply(), clear(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/hbnet/HBNetScore.hh
• src/protocols/hbnet/HBNetScore.cc