Rosetta: core::optimization::GA_Minimizer Class Reference

#include <GA_Minimizer.hh>

Public Member Functions
	GA_Minimizer (Multifunc &func_in, MinimizerOptions const &options)

Real	run (Multivec &phipsi_inout, int max_time)

Private Member Functions
EItem	randomize (const EItem &sit, int &time)

EItem	loop (std::vector< EItem > &pop, int &time)

void	step (std::vector< EItem > &pop, int &c_time, int &mres, EItem &shift)

void	mutate (EItem &)
	genetic operators More...

void	cross_over (EItem &V, EItem &A, EItem &B)

Private Attributes
Multifunc &	func_

EItem	best_

int	allowed_time_

bool	add_original_

Real	min_error_

Real	mutation_probability_

Real	minimize_tolerance_

Constructor & Destructor Documentation

core::optimization::GA_Minimizer::GA_Minimizer	(	Multifunc &	func_in,
		MinimizerOptions const &	options
	)

inline

Member Function Documentation

void core::optimization::GA_Minimizer::cross_over	(	EItem &	V,
		EItem &	A,
		EItem &	B
	)

private

References mutate(), core::optimization::EItem::tag, core::optimization::EItem::v, and core::optimization::yes_no_random().

Referenced by step().

EItem core::optimization::GA_Minimizer::loop	(	std::vector< EItem > &	pop,
		int &	time
	)

private

References add_original_, allowed_time_, best_, func_, min_error_, core::optimization::EItem::r, core::scoring::rg, step(), protocols::hybridization::t, core::optimization::EItem::tag, core::optimization::TR(), and core::optimization::EItem::v.

Referenced by randomize().

void core::optimization::GA_Minimizer::mutate ( EItem & V )

private

genetic operators

References mutation_probability_, core::scoring::rg, core::optimization::EItem::tag, core::optimization::EItem::v, and core::optimization::yes_no_random().

Referenced by cross_over(), and step().

EItem core::optimization::GA_Minimizer::randomize	(	const EItem &	sit,
		int &	time
	)

private

References best_, func_, loop(), core::optimization::EItem::r, core::scoring::rg, protocols::hybridization::t, core::optimization::EItem::tag, and core::optimization::EItem::v.

Referenced by run().

Real core::optimization::GA_Minimizer::run	(	Multivec &	phipsi_inout,
		int	max_time
	)

References allowed_time_, best_, func_, core::optimization::EItem::r, randomize(), core::optimization::TR(), and core::optimization::EItem::v.

Referenced by core::optimization::Minimizer::run().

void core::optimization::GA_Minimizer::step	(	std::vector< EItem > &	pop,
		int &	c_time,
		int &	mres,
		EItem &	shift
	)

private

References allowed_time_, best_, cross_over(), func_, minimize_tolerance_, mutate(), core::optimization::EItem::r, core::scoring::rg, core::optimization::EItem::sort_R_function(), core::optimization::TR(), core::optimization::EItem::v, and core::optimization::yes_no_random().

Referenced by loop().

Member Data Documentation

bool core::optimization::GA_Minimizer::add_original_

private

Referenced by loop().

int core::optimization::GA_Minimizer::allowed_time_

private

Referenced by loop(), run(), and step().

EItem core::optimization::GA_Minimizer::best_

private

Referenced by loop(), randomize(), run(), and step().

Multifunc& core::optimization::GA_Minimizer::func_

private

Referenced by loop(), randomize(), run(), and step().

Real core::optimization::GA_Minimizer::min_error_

private

Referenced by loop().

Real core::optimization::GA_Minimizer::minimize_tolerance_

private

Referenced by step().

Real core::optimization::GA_Minimizer::mutation_probability_

private

Referenced by mutate().

The documentation for this class was generated from the following files:

src/core/optimization/GA_Minimizer.hh
src/core/optimization/GA_Minimizer.cc