DirectSegmentLookup.cc File Reference

#include <vector>
#include <numeric>
#include <boost/range/combine.hpp>
#include <boost/range/algorithm.hpp>
#include <boost/range.hpp>
#include <boost/format.hpp>
#include <basic/Tracer.hh>
#include <numeric/alignment/rmsd_calc.hh>
#include <core/pose/xyzStripeHashPose.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/id/types.hh>
#include <core/conformation/Residue.hh>
#include <protocols/indexed_structure_store/Datatypes.hh>
#include <protocols/indexed_structure_store/Datatypes.json.hh>
#include <protocols/indexed_structure_store/StructureStore.hh>
#include <protocols/indexed_structure_store/search/QueryDatabase.hh>
#include <protocols/indexed_structure_store/search/QueryDatabase.json.hh>
#include <protocols/indexed_structure_store/orient_array.hh>
#include <protocols/indexed_structure_store/vector_tools.hh>
#include <protocols/indexed_structure_store/pose_utility.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/indexed_structure_store/DirectSegmentLookup.hh>
#include <protocols/indexed_structure_store/DirectSegmentLookup.json.hh>
#include "ndarray.h"
#include "ndarray/eigen.h"

Namespaces
	ndarray
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::indexed_structure_store

Functions
static basic::Tracer	TR ("protocols.indexed_structure_store.DirectSegmentLookup")
template<int Nf, int Np, typename T , int N, int C>
boost::enable_if_c< ((C+Nf-N-Np)> =1), ArrayRef< T, Nf,(C+Nf-N)> >::type	ndarray::flatten_center (Array< T, N, C > const &input)
	Create a view into an array with interior contiguous dimensions merged. More...
ndarray::Array< ResidueEntry, 1, 1 >	protocols::indexed_structure_store::_pose_res (core::pose::Pose &pose, core::Size start_res, core::Size end_res)

Detailed Description

Author

Alex Ford (forda.nosp@m.s@uw.nosp@m..edu)

Function Documentation

static basic::Tracer TR ( "protocols.indexed_structure_store.DirectSegmentLookup"  )

static