core::pack::scmin Namespace Reference

Classes
class	AtomTreeCollection
	A collection of ResidueAtomTreeCollection objects for an entire design task. More...
class	AtomTreeSCMinMinimizerMap
class	CartSCMinMinimizerMap
class	CartSCMinMultifunc
class	ResidueAtomTreeCollection
	The conformation::Residues and kinematics::AtomTrees for a single collection of rotamers (e.g. a RotamerSet). Each chemical::ResidueType gets its own residue/atomtree pair. A particular AtomTree/Residue pair can be set as "active" and manipulated by setter and getters for either the coordinates of the Residues or the chi dihedrals of the AtomTree. More...
class	ResidueAtomTreeCollectionMomento
	Class to save the state for a ResidueAtomTreeCollection. More...
class	SCMinMinimizerMap
class	SCMinMultifunc
class	SidechainStateAssignment
	A simple class for tracking a network state and its energy where each sidechain's state is described by a series of chi angles. More...

Typedefs
typedef utility::pointer::shared_ptr < ResidueAtomTreeCollectionMomento >	ResidueAtomTreeCollectionMomentoOP
typedef utility::pointer::shared_ptr < ResidueAtomTreeCollectionMomento const >	ResidueAtomTreeCollectionMomentoCOP
typedef utility::pointer::shared_ptr < ResidueAtomTreeCollection >	ResidueAtomTreeCollectionOP
typedef utility::pointer::shared_ptr < ResidueAtomTreeCollection const >	ResidueAtomTreeCollectionCOP
typedef utility::pointer::shared_ptr < AtomTreeCollection >	AtomTreeCollectionOP
typedef utility::pointer::shared_ptr < AtomTreeCollection const >	AtomTreeCollectionCOP
typedef utility::pointer::shared_ptr < AtomTreeSCMinMinimizerMap >	AtomTreeSCMinMinimizerMapOP
typedef utility::pointer::shared_ptr < AtomTreeSCMinMinimizerMap const >	AtomTreeSCMinMinimizerMapCOP
typedef utility::pointer::shared_ptr < CartSCMinMinimizerMap >	CartSCMinMinimizerMapOP
typedef utility::pointer::shared_ptr < CartSCMinMinimizerMap const >	CartSCMinMinimizerMapCOP
typedef utility::pointer::shared_ptr < CartSCMinMultifunc >	CartSCMinMultifuncOP
typedef utility::pointer::shared_ptr < CartSCMinMultifunc >	CartSCMinMultifuncCOP
typedef utility::pointer::shared_ptr < SCMinMinimizerMap >	SCMinMinimizerMapOP
typedef utility::pointer::shared_ptr < SCMinMinimizerMap const >	SCMinMinimizerMapCOP
typedef utility::pointer::shared_ptr < SCMinMultifunc >	SCMinMultifuncOP
typedef utility::pointer::shared_ptr < SCMinMultifunc >	SCMinMultifuncCOP
typedef utility::pointer::shared_ptr < SidechainStateAssignment >	SidechainStateAssignmentOP
typedef utility::pointer::shared_ptr < SidechainStateAssignment const >	SidechainStateAssignmentCOP

Functions
optimization::DOF_NodeOP	dummy_nodeop (new optimization::DOF_Node(id::DOF_ID(), nullptr))
static basic::Tracer	TR ("core.pack.scmin.SCMinMultifunc")

Variables
optimization::DOF_NodeOP	dummy_nodeop

Typedef Documentation

typedef utility::pointer::shared_ptr< AtomTreeCollection const > core::pack::scmin::AtomTreeCollectionCOP

typedef utility::pointer::shared_ptr< AtomTreeCollection > core::pack::scmin::AtomTreeCollectionOP

typedef utility::pointer::shared_ptr< AtomTreeSCMinMinimizerMap const > core::pack::scmin::AtomTreeSCMinMinimizerMapCOP

typedef utility::pointer::shared_ptr< AtomTreeSCMinMinimizerMap > core::pack::scmin::AtomTreeSCMinMinimizerMapOP

typedef utility::pointer::shared_ptr< CartSCMinMinimizerMap const > core::pack::scmin::CartSCMinMinimizerMapCOP

typedef utility::pointer::shared_ptr< CartSCMinMinimizerMap > core::pack::scmin::CartSCMinMinimizerMapOP

typedef utility::pointer::shared_ptr< CartSCMinMultifunc > core::pack::scmin::CartSCMinMultifuncCOP

typedef utility::pointer::shared_ptr< CartSCMinMultifunc > core::pack::scmin::CartSCMinMultifuncOP

typedef utility::pointer::shared_ptr< ResidueAtomTreeCollection const > core::pack::scmin::ResidueAtomTreeCollectionCOP

typedef utility::pointer::shared_ptr< ResidueAtomTreeCollectionMomento const > core::pack::scmin::ResidueAtomTreeCollectionMomentoCOP

typedef utility::pointer::shared_ptr< ResidueAtomTreeCollectionMomento > core::pack::scmin::ResidueAtomTreeCollectionMomentoOP

typedef utility::pointer::shared_ptr< ResidueAtomTreeCollection > core::pack::scmin::ResidueAtomTreeCollectionOP

typedef utility::pointer::shared_ptr< SCMinMinimizerMap const > core::pack::scmin::SCMinMinimizerMapCOP

typedef utility::pointer::shared_ptr< SCMinMinimizerMap > core::pack::scmin::SCMinMinimizerMapOP

typedef utility::pointer::shared_ptr< SCMinMultifunc > core::pack::scmin::SCMinMultifuncCOP

typedef utility::pointer::shared_ptr< SCMinMultifunc > core::pack::scmin::SCMinMultifuncOP

typedef utility::pointer::shared_ptr< SidechainStateAssignment const > core::pack::scmin::SidechainStateAssignmentCOP

typedef utility::pointer::shared_ptr< SidechainStateAssignment > core::pack::scmin::SidechainStateAssignmentOP

Function Documentation

optimization::DOF_NodeOP core::pack::scmin::dummy_nodeop

(

new optimization::

DOF_Nodeid::DOF_ID(), nullptr

)

static basic::Tracer core::pack::scmin::TR ( "core.pack.scmin.SCMinMultifunc"  )

static

Referenced by core::pack::scmin::SCMinMultifunc::scmin_numerical_derivative_check().

Variable Documentation

optimization::DOF_NodeOP core::pack::scmin::dummy_nodeop

Referenced by core::pack::scmin::CartSCMinMinimizerMap::dof_node(), and core::pack::scmin::CartSCMinMinimizerMap::dof_node_for_chi().