| bond_angle_residue_type_param_set() | protocols::branch_angle::BranchAngleOptimizer | |
| bond_angle_residue_type_param_set() const | protocols::branch_angle::BranchAngleOptimizer | |
| bond_angle_residue_type_param_set(core::scoring::mm::MMBondAngleResidueTypeParamSetOP param_set) | protocols::branch_angle::BranchAngleOptimizer | |
| bond_angle_residue_type_param_set(core::scoring::mm::MMBondAngleResidueTypeParamSetCOP param_set) | protocols::branch_angle::BranchAngleOptimizer | |
| bond_angle_residue_type_param_set_ | protocols::branch_angle::BranchAngleOptimizer | private |
| BranchAngleOptimizer(core::scoring::mm::MMBondAngleLibrary const &mm_bondangle_library) | protocols::branch_angle::BranchAngleOptimizer | |
| BranchAngleOptimizer() | protocols::branch_angle::BranchAngleOptimizer | |
| BranchAngleOptimizer(BranchAngleOptimizer const &src) | protocols::branch_angle::BranchAngleOptimizer | |
| coef1_ | protocols::branch_angle::BranchAngleOptimizer | private |
| coef2_ | protocols::branch_angle::BranchAngleOptimizer | private |
| coef_map1_ | protocols::branch_angle::BranchAngleOptimizer | private |
| coef_map2_ | protocols::branch_angle::BranchAngleOptimizer | private |
| initialized() const | protocols::branch_angle::BranchAngleOptimizer | inline |
| initialized_ | protocols::branch_angle::BranchAngleOptimizer | private |
| mm_bondangle_library_ | protocols::branch_angle::BranchAngleOptimizer | private |
| num_coef1() const | protocols::branch_angle::BranchAngleOptimizer | |
| num_coef2() const | protocols::branch_angle::BranchAngleOptimizer | |
| num_undefined_coef1() const | protocols::branch_angle::BranchAngleOptimizer | |
| num_undefined_coef2() const | protocols::branch_angle::BranchAngleOptimizer | |
| operator=(BranchAngleOptimizer const &src)=delete | protocols::branch_angle::BranchAngleOptimizer | private |
| optimize_angles(core::pose::Pose &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, bool optimize_for_minimum=false) | protocols::branch_angle::BranchAngleOptimizer | |
| overall_params(core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::Real &Ktheta, core::Real &theta0, core::Real &energy0) | protocols::branch_angle::BranchAngleOptimizer | |
| param1(core::pose::Pose const &pose, core::id::AtomID const &main_atomid1, core::id::AtomID const ¢er_atomid, core::id::AtomID const &main_atomid2, core::id::AtomID const &branch_atomid1) const | protocols::branch_angle::BranchAngleOptimizer | |
| param2(core::pose::Pose const &pose, core::id::AtomID const &main_atomid1, core::id::AtomID const ¢er_atomid, core::id::AtomID const &main_atomid2, core::id::AtomID const &branch_atomid1, core::id::AtomID const &branch_atomid2) const | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef1(std::istream &in) | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef1(std::string const &filename) | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef1_default() | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef1_user() | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef2(std::istream &in) | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef2(std::string const &filename) | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef2_default() | protocols::branch_angle::BranchAngleOptimizer | |
| read_coef2_user() | protocols::branch_angle::BranchAngleOptimizer | |
| read_database() | protocols::branch_angle::BranchAngleOptimizer | |
| read_undefined_coef1(std::istream &in) | protocols::branch_angle::BranchAngleOptimizer | |
| read_undefined_coef1(std::string const &filename) | protocols::branch_angle::BranchAngleOptimizer | |
| read_undefined_coef1() | protocols::branch_angle::BranchAngleOptimizer | |
| read_undefined_coef2(std::istream &in) | protocols::branch_angle::BranchAngleOptimizer | |
| read_undefined_coef2(std::string const &filename) | protocols::branch_angle::BranchAngleOptimizer | |
| read_undefined_coef2() | protocols::branch_angle::BranchAngleOptimizer | |
| tolerance() const | protocols::branch_angle::BranchAngleOptimizer | inline |
| tolerance(core::Real tolerance) | protocols::branch_angle::BranchAngleOptimizer | inline |
| tolerance_ | protocols::branch_angle::BranchAngleOptimizer | private |
| undefined_coef1_ | protocols::branch_angle::BranchAngleOptimizer | private |
| undefined_coef2_ | protocols::branch_angle::BranchAngleOptimizer | private |
| write_database() const | protocols::branch_angle::BranchAngleOptimizer | |
| write_undefined_coef1(std::ostream &out) const | protocols::branch_angle::BranchAngleOptimizer | |
| write_undefined_coef1(std::string const &filename) const | protocols::branch_angle::BranchAngleOptimizer | |
| write_undefined_coef1() const | protocols::branch_angle::BranchAngleOptimizer | |
| write_undefined_coef2(std::ostream &out) const | protocols::branch_angle::BranchAngleOptimizer | |
| write_undefined_coef2(std::string const &filename) const | protocols::branch_angle::BranchAngleOptimizer | |
| write_undefined_coef2() const | protocols::branch_angle::BranchAngleOptimizer | |
| ~BranchAngleOptimizer() | protocols::branch_angle::BranchAngleOptimizer | virtual |
1.8.7