core::fragment::FragmentIO Member List

This is the complete list of members for core::fragment::FragmentIO, including all inherited members.

bAnnotate_	core::fragment::FragmentIO	private
clean_frag_cache()	core::fragment::FragmentIO
frag_cache_	core::fragment::FragmentIO	privatestatic
frag_factory_	core::fragment::FragmentIO	privatestatic
FragFileCache typedef	core::fragment::FragmentIO	private
FragmentIO()	core::fragment::FragmentIO	inline
FragmentIO(Size top, Size ncopies=1, bool bAnnotate=true)	core::fragment::FragmentIO	inline
get_frag_factory()	core::fragment::FragmentIO
ncopies_	core::fragment::FragmentIO	private
read_data(std::string const &filename)	core::fragment::FragmentIO
read_data_from_stream(std::string const &filename, std::istream &data)	core::fragment::FragmentIO
read_frag_data(std::istream &data, std::string &next_line, FrameList &next_frames)	core::fragment::FragmentIO	private
read_frames_from_file(std::string const &filename, FrameList &)	core::fragment::FragmentIO
read_frames_from_stream(std::string const &filename, std::string const &firstline, std::istream &data, FrameList &)	core::fragment::FragmentIO
read_next_frames(std::istream &data, std::string &next_line, FrameList &next_frames)	core::fragment::FragmentIO	private
set_ncopies(Size setting)	core::fragment::FragmentIO	inline
set_read_annotation(bool setting=true)	core::fragment::FragmentIO	inline
set_top_frag_num(Size setting)	core::fragment::FragmentIO	inline
top_	core::fragment::FragmentIO	private
write_data(std::string const &file, FragSet const &frags)	core::fragment::FragmentIO