Classes
class	BuriedUnsatPenaltyEdge
	Each BuriedUnsatPenaltyEdge represents a hydrogen bonding interaction between two residues, and stores information about (a) the number of hydrogen bonds, and (b) the atoms involved. More...

class	BuriedUnsatPenaltyEdgeData

class	BuriedUnsatPenaltyGraph
	The BuriedUnsatPenaltyGraph consists of nodes representing resiudues (or rotamers in packing mode) and edges representing hydrogen-bonding interactions. Each node stores a list of hydrogen bond donor and acceptor atoms that we're seeking to satisfy; each edge stores the donors and acceptors that are connected by hydrogen bonds when two residues (or rotamers) interact. More...

class	BuriedUnsatPenaltyGraphContainer
	A container for the BuriedUnsatPenaltyGraph, to allow it to be cached in a pose while skirting multiple inheritance issues. More...

class	BuriedUnsatPenaltyGraphHbond
	A hydrogen bond between two atoms in two residues. Since this is tied to a BuriedUnsatPenaltyEdge (which in turn is associated with two residues), it stores only donor group index and acceptor group index. The group indices match the indexing in the corresponding node. More...

class	BuriedUnsatPenaltyGraphHbondDonorAcceptorGroup
	A class for a hydrogen bond donor group or acceptor group. More...

class	BuriedUnsatPenaltyGraphOptions
	Options container for the BuriedUnsatPenaltyGraph. Initialized by the BuriedUnsatPenalty energy method. More...

class	BuriedUnsatPenaltyNode
	Each BuriedUnsatPenaltyNode represents a rotamer from the RotamerSets object, or a residue (if we're doing a simple scoring pass). More...

class	BuriedUnsatPenaltyNodeData
	Data stored inside a BuriedUnsatPenaltyNode. More...

Typedefs
typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraphHbond >	BuriedUnsatPenaltyGraphHbondOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraphHbond const >	BuriedUnsatPenaltyGraphHbondCOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyNodeData >	BuriedUnsatPenaltyNodeDataOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyNodeData const >	BuriedUnsatPenaltyNodeDataCOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyNode >	BuriedUnsatPenaltyNodeOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyNode const >	BuriedUnsatPenaltyNodeCOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyEdgeData >	BuriedUnsatPenaltyEdgeDataOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyEdgeData const >	BuriedUnsatPenaltyEdgeDataCOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyEdge >	BuriedUnsatPenaltyEdgeOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyEdge const >	BuriedUnsatPenaltyEdgeCOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraph >	BuriedUnsatPenaltyGraphOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraph const >	BuriedUnsatPenaltyGraphCOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraphContainer >	BuriedUnsatPenaltyGraphContainerOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraphContainer const >	BuriedUnsatPenaltyGraphContainerCOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraphOptions >	BuriedUnsatPenaltyGraphOptionsOP

typedef utility::pointer::shared_ptr < BuriedUnsatPenaltyGraphOptions const >	BuriedUnsatPenaltyGraphOptionsCOP