#include <ScorePoseSegmentFromResidueSelectorFilter.hh>

Inheritance diagram for protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter:

Public Member Functions
	ScorePoseSegmentFromResidueSelectorFilter ()

	~ScorePoseSegmentFromResidueSelectorFilter () override

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

void	residue_selector (core::select::residue_selector::ResidueSelectorCOP const &select)

void	residue_selector (core::select::residue_selector::ResidueSelector const &select)

core::scoring::ScoreFunctionOP	scorefxn () const

void	scorefxn (core::scoring::ScoreFunctionOP const &scorefxn)

std::string	score_id_name () const

void	score_id_name (std::string name)

bool	in_context () const

void	in_context (bool pick)

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Static Private Member Functions
static core::select::residue_selector::ResidueSelectorCOP	default_selector ()

static core::scoring::ScoreFunctionOP	default_scorefxn ()

Private Attributes
std::string	score_id_name_

core::select::residue_selector::ResidueSelectorCOP	residue_select_

core::scoring::ScoreFunctionOP	scorefxn_

bool	in_context_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::ScorePoseSegmentFromResidueSelectorFilter ( )

protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::~ScorePoseSegmentFromResidueSelectorFilter ( )

override

Member Function Documentation

bool protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), protocols::filters::Filter::score(), and protocols::fold_from_loops::filters::TR().

static std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::class_name ( )

inlinestatic

Referenced by protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilterCreator::keyname(), name(), and provide_xml_schema().

protocols::filters::FilterOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

core::Real protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::compute ( core::pose::Pose const & pose ) const

References protocols::grafting::simple_movers::DeleteRegionMover::apply(), core::pose::Pose::conformation(), core::pose::Pose::detached_copy(), core::conformation::Conformation::detect_disulfides(), in_context_, residue_select_, protocols::filters::Filter::score(), core::pose::Pose::set_new_conformation(), and protocols::grafting::simple_movers::DeleteRegionMover::set_residue_selector().

Referenced by apply(), report(), and report_sm().

static core::scoring::ScoreFunctionOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::default_scorefxn ( )

inlinestaticprivate

References core::scoring::get_score_function().

static core::select::residue_selector::ResidueSelectorCOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::default_selector ( )

inlinestaticprivate

protocols::filters::FilterOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

bool protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::in_context ( ) const

inline

References in_context_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::in_context ( bool pick )

inline

References in_context_.

std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

Referenced by score_id_name().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References core::select::residue_selector::get_residue_selector(), in_context(), core::scoring::parse_score_function(), residue_selector(), score_id_name(), and scorefxn().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::select::residue_selector::attributes_for_parse_residue_selector_when_required(), core::scoring::attributes_for_parse_score_function_w_description(), class_name(), core::id::to_string(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilterCreator::provide_xml_schema().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and protocols::filters::Filter::score().

core::Real protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and protocols::filters::Filter::score().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::residue_selector ( core::select::residue_selector::ResidueSelectorCOP const & select )

inline

References residue_select_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::residue_selector ( core::select::residue_selector::ResidueSelector const & select )

inline

References core::select::residue_selector::ResidueSelector::clone(), and residue_select_.

std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::score_id_name ( ) const

inline

References score_id_name_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::score_id_name ( std::string name )

inline

References name(), and score_id_name_.

core::scoring::ScoreFunctionOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::scorefxn ( ) const

inline

References scorefxn_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::scorefxn ( core::scoring::ScoreFunctionOP const & scorefxn )

inline

References scorefxn(), and scorefxn_.

Referenced by scorefxn().

Member Data Documentation

bool protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::in_context_

private

Referenced by compute(), and in_context().

core::select::residue_selector::ResidueSelectorCOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::residue_select_

private

Referenced by compute(), and residue_selector().

std::string protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::score_id_name_

private

Referenced by score_id_name().

core::scoring::ScoreFunctionOP protocols::fold_from_loops::filters::ScorePoseSegmentFromResidueSelectorFilter::scorefxn_

private

Referenced by scorefxn().

The documentation for this class was generated from the following files:

src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.hh
src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.cc

Public Member Functions

Static Public Member Functions

Static Private Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation