core::scoring::PolymerBondedNeighborIterator Class Reference

#include <PolymerBondedEnergyContainer.hh>

Inheritance diagram for core::scoring::PolymerBondedNeighborIterator:

Public Member Functions
	~PolymerBondedNeighborIterator () override
	PolymerBondedNeighborIterator (Size const base_in, utility::vector1< Size > const &positions_in, PolymerBondedEnergyContainer &parent)
ResidueNeighborIterator &	operator= (ResidueNeighborIterator const &src) override
ResidueNeighborIterator const &	operator++ () override
bool	operator== (ResidueNeighborIterator const &other) const override
bool	operator!= (ResidueNeighborIterator const &other) const override
Size	upper_neighbor_id () const override
Size	lower_neighbor_id () const override
Size	residue_iterated_on () const override
Size	neighbor_id () const override
void	save_energy (EnergyMap const &emap) override
void	retrieve_energy (EnergyMap &emap) const override
void	accumulate_energy (EnergyMap &emap) const override
void	mark_energy_computed () override
void	mark_energy_uncomputed () override
bool	energy_computed () const override
Public Member Functions inherited from core::scoring::ResidueNeighborIterator
	~ResidueNeighborIterator () override

Private Member Functions
PolymerBondedNeighborIterator &	operator= (PolymerBondedNeighborIterator const &src)

Private Attributes
Size	base_
Size	curr_idx_
utility::vector1< Size >	pos_
PolymerBondedEnergyContainer *	parent_

Constructor & Destructor Documentation

core::scoring::PolymerBondedNeighborIterator::~PolymerBondedNeighborIterator ( )

overridedefault

core::scoring::PolymerBondedNeighborIterator::PolymerBondedNeighborIterator	(	Size const	base_in,
		utility::vector1< Size > const &	positions_in,
		PolymerBondedEnergyContainer &	parent
	)

References curr_idx_.

Member Function Documentation

void core::scoring::PolymerBondedNeighborIterator::accumulate_energy ( EnergyMap &  emap ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_, core::scoring::PolymerBondedEnergyContainer::get_energy(), neighbor_id(), parent_, and core::scoring::PolymerBondedEnergyContainer::score_types().

bool core::scoring::PolymerBondedNeighborIterator::energy_computed ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_, core::scoring::PolymerBondedEnergyContainer::get_computed(), neighbor_id(), and parent_.

Size core::scoring::PolymerBondedNeighborIterator::lower_neighbor_id ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_.

void core::scoring::PolymerBondedNeighborIterator::mark_energy_computed ( )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_, neighbor_id(), parent_, and core::scoring::PolymerBondedEnergyContainer::set_computed().

void core::scoring::PolymerBondedNeighborIterator::mark_energy_uncomputed ( )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_, neighbor_id(), parent_, and core::scoring::PolymerBondedEnergyContainer::set_computed().

Size core::scoring::PolymerBondedNeighborIterator::neighbor_id ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References curr_idx_, and pos_.

Referenced by accumulate_energy(), energy_computed(), mark_energy_computed(), mark_energy_uncomputed(), operator==(), retrieve_energy(), and save_energy().

bool core::scoring::PolymerBondedNeighborIterator::operator!= ( ResidueNeighborIterator const &  other ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

ResidueNeighborIterator const & core::scoring::PolymerBondedNeighborIterator::operator++ ( )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References curr_idx_.

PolymerBondedNeighborIterator& core::scoring::PolymerBondedNeighborIterator::operator= ( PolymerBondedNeighborIterator const &  src )

private

ResidueNeighborIterator & core::scoring::PolymerBondedNeighborIterator::operator= ( ResidueNeighborIterator const &  src )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_, parent_, and pos_.

bool core::scoring::PolymerBondedNeighborIterator::operator== ( ResidueNeighborIterator const &  other ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References core::scoring::ResidueNeighborIterator::neighbor_id(), neighbor_id(), core::scoring::ResidueNeighborIterator::residue_iterated_on(), and residue_iterated_on().

Size core::scoring::PolymerBondedNeighborIterator::residue_iterated_on ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_.

Referenced by operator==().

void core::scoring::PolymerBondedNeighborIterator::retrieve_energy ( EnergyMap &  emap ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_, core::scoring::PolymerBondedEnergyContainer::get_energy(), neighbor_id(), parent_, and core::scoring::PolymerBondedEnergyContainer::score_types().

void core::scoring::PolymerBondedNeighborIterator::save_energy ( EnergyMap const &  emap )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References base_, protocols::buns::energy, neighbor_id(), parent_, core::scoring::PolymerBondedEnergyContainer::score_types(), and core::scoring::PolymerBondedEnergyContainer::set_energy().

Size core::scoring::PolymerBondedNeighborIterator::upper_neighbor_id ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References curr_idx_, and pos_.

Member Data Documentation

Size core::scoring::PolymerBondedNeighborIterator::base_

private

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), operator=(), residue_iterated_on(), retrieve_energy(), and save_energy().

Size core::scoring::PolymerBondedNeighborIterator::curr_idx_

private

Referenced by neighbor_id(), operator++(), PolymerBondedNeighborIterator(), and upper_neighbor_id().

PolymerBondedEnergyContainer* core::scoring::PolymerBondedNeighborIterator::parent_

private

Referenced by accumulate_energy(), energy_computed(), mark_energy_computed(), mark_energy_uncomputed(), operator=(), retrieve_energy(), and save_energy().

utility::vector1< Size > core::scoring::PolymerBondedNeighborIterator::pos_

private

Referenced by neighbor_id(), operator=(), and upper_neighbor_id().

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The documentation for this class was generated from the following files:

• src/core/scoring/PolymerBondedEnergyContainer.hh
• src/core/scoring/PolymerBondedEnergyContainer.cc