protocols::antibody::AntibodyCDRGrafter Member List

This is the complete list of members for protocols::antibody::AntibodyCDRGrafter, including all inherited members.

ab_info_	protocols::antibody::AntibodyCDRGrafter	private
anchored_graft_mover_	protocols::antibody::AntibodyCDRGrafter	private
AntibodyCDRGrafter()	protocols::antibody::AntibodyCDRGrafter
AntibodyCDRGrafter(AntibodyInfoOP ab_info)	protocols::antibody::AntibodyCDRGrafter
AntibodyCDRGrafter(AntibodyInfoOP ab_info, core::pose::Pose const &donor_structure, utility::vector1< bool > const &cdrs_to_graft, core::Size nter_overhang=3, core::Size cter_overhang=3)	protocols::antibody::AntibodyCDRGrafter
AntibodyCDRGrafter(AntibodyCDRGrafter const &src)	protocols::antibody::AntibodyCDRGrafter
apply(core::pose::Pose &pose) override	protocols::antibody::AntibodyCDRGrafter	virtual
apply_to_cdr(core::pose::Pose &pose, core::pose::Pose &cdr_region_with_overhang, CDRNameEnum const cdr, protocols::grafting::AnchoredGraftMoverOP grafter)	protocols::antibody::AntibodyCDRGrafter
cdr_definition_	protocols::antibody::AntibodyCDRGrafter	private
cdrs_to_graft_	protocols::antibody::AntibodyCDRGrafter	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::antibody::AntibodyCDRGrafter	virtual
create()	protocols::moves::Mover	virtual
cter_overhang_	protocols::antibody::AntibodyCDRGrafter	private
dihedral_cst_weight_	protocols::antibody::AntibodyCDRGrafter	private
donor_structure_	protocols::antibody::AntibodyCDRGrafter	private
fresh_instance() const override	protocols::antibody::AntibodyCDRGrafter	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::antibody::AntibodyCDRGrafter	virtual
get_native_pose() const	protocols::moves::Mover
get_primary_graft_mover()	protocols::antibody::AntibodyCDRGrafter
get_secondary_graft_mover()	protocols::antibody::AntibodyCDRGrafter
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
graft_mover_	protocols::antibody::AntibodyCDRGrafter	private
include_cdr4_	protocols::antibody::AntibodyCDRGrafter	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::antibody::AntibodyCDRGrafter	static
name()	protocols::moves::Mover	inlinestatic
neighbor_cdrs_	protocols::antibody::AntibodyCDRGrafter	private
nter_overhang_	protocols::antibody::AntibodyCDRGrafter	private
numbering_scheme_	protocols::antibody::AntibodyCDRGrafter	private
optimize_cdrs_	protocols::antibody::AntibodyCDRGrafter	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::antibody::AntibodyCDRGrafter	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const override	protocols::antibody::AntibodyCDRGrafter	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::antibody::AntibodyCDRGrafter	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
scorefxn_	protocols::antibody::AntibodyCDRGrafter	private
scorefxn_low_	protocols::antibody::AntibodyCDRGrafter	private
set_cdr_only(CDRNameEnum cdr)	protocols::antibody::AntibodyCDRGrafter
set_cdrs(utility::vector1< bool > const &cdrs)	protocols::antibody::AntibodyCDRGrafter
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_defaults()	protocols::antibody::AntibodyCDRGrafter	private
set_dihedral_constraint_weight(core::Real dih_cst_wt)	protocols::antibody::AntibodyCDRGrafter
set_donor_structure(core::pose::Pose const &pose)	protocols::antibody::AntibodyCDRGrafter
set_idealize_insert(bool idealize_insert)	protocols::antibody::AntibodyCDRGrafter
set_include_cdr4_in_optimization(bool include_cdr4)	protocols::antibody::AntibodyCDRGrafter
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_optimize_cdrs(bool optimize_cdrs)	protocols::antibody::AntibodyCDRGrafter
set_overhang(core::Size nter_overhang, core::Size cter_overhang)	protocols::antibody::AntibodyCDRGrafter
set_scorefxn_low(core::scoring::ScoreFunctionCOP scorefxn)	protocols::antibody::AntibodyCDRGrafter
set_scorefxn_pack(core::scoring::ScoreFunctionCOP scorefxn)	protocols::antibody::AntibodyCDRGrafter
set_stop_after_closure(bool stop_after_closure)	protocols::antibody::AntibodyCDRGrafter
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_use_secondary_graft_mover_if_needed(bool use_secondary_graft_mover)	protocols::antibody::AntibodyCDRGrafter
setup_classes()	protocols::antibody::AntibodyCDRGrafter	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
stop_after_closure_	protocols::antibody::AntibodyCDRGrafter	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_secondary_graft_mover_	protocols::antibody::AntibodyCDRGrafter	private
~AntibodyCDRGrafter() override	protocols::antibody::AntibodyCDRGrafter