protocols::kinematic_closure::ClosureProblem Member List

This is the complete list of members for protocols::kinematic_closure::ClosureProblem, including all inherited members.

apply_internal_coordinates(ParameterList const &bond_lengths, ParameterList const &bond_angles, ParameterList const &torsion_angles, Pose &pose) const	protocols::kinematic_closure::ClosureProblem	private
c_n(core::Size residue) const	protocols::kinematic_closure::ClosureProblem
c_n_ca(core::Size residue, AngleUnit unit) const	protocols::kinematic_closure::ClosureProblem
ca_c(core::Size residue) const	protocols::kinematic_closure::ClosureProblem
ca_c_n(core::Size residue, AngleUnit unit) const	protocols::kinematic_closure::ClosureProblem
ClosureProblem()	protocols::kinematic_closure::ClosureProblem
ClosureSolution class	protocols::kinematic_closure::ClosureProblem	friend
cut_residue() const	protocols::kinematic_closure::ClosureProblem
extract_cartesian_coordinates(Pose const &pose, CoordinateList &atom_xyzs) const	protocols::kinematic_closure::ClosureProblem	private
extract_internal_coordinates(CoordinateList const &atom_xyzs, ParameterList &bond_lengths, ParameterList &bond_angles, ParameterList &torsion_angles) const	protocols::kinematic_closure::ClosureProblem	private
extract_internal_coordinates(Pose const &pose, ParameterList &bond_lengths, ParameterList &bond_angles, ParameterList &torsion_angles) const	protocols::kinematic_closure::ClosureProblem	private
first_residue() const	protocols::kinematic_closure::ClosureProblem
frame(Pose const &pose, Loop const &loop, pivot_pickers::PivotPickerOP pivot_picker)	protocols::kinematic_closure::ClosureProblem
frame_called_	protocols::kinematic_closure::ClosureProblem	private
frame_lower_pivot(Pose const &pose, CoordinateList &atom_xyzs) const	protocols::kinematic_closure::ClosureProblem	private
frame_upper_pivot(Pose const &pose, CoordinateList &atom_xyzs) const	protocols::kinematic_closure::ClosureProblem	private
id_from_index(core::Size index) const	protocols::kinematic_closure::ClosureProblem	private
ids_span_cut(core::id::AtomID left, core::id::AtomID right) const	protocols::kinematic_closure::ClosureProblem	private
is_nonpivot_residue(core::Size residue) const	protocols::kinematic_closure::ClosureProblem
is_pivot_residue(core::Size residue) const	protocols::kinematic_closure::ClosureProblem
last_residue() const	protocols::kinematic_closure::ClosureProblem
Memento class	protocols::kinematic_closure::ClosureProblem	friend
mutate_residues(core::pose::Pose &pose, utility::vector1< std::string > sequence) const	protocols::kinematic_closure::ClosureProblem	private
n_ca(core::Size residue) const	protocols::kinematic_closure::ClosureProblem
n_ca_c(core::Size residue, AngleUnit unit) const	protocols::kinematic_closure::ClosureProblem
nonpivot_residues() const	protocols::kinematic_closure::ClosureProblem
num_atoms() const	protocols::kinematic_closure::ClosureProblem
num_residues() const	protocols::kinematic_closure::ClosureProblem
omega(core::Size residue, AngleUnit unit) const	protocols::kinematic_closure::ClosureProblem
perturb_angles()	protocols::kinematic_closure::ClosureProblem
perturb_c_n(core::Size residue, Real value)	protocols::kinematic_closure::ClosureProblem
perturb_c_n_ca(core::Size residue, Real value, AngleUnit unit)	protocols::kinematic_closure::ClosureProblem
perturb_ca_c(core::Size residue, Real value)	protocols::kinematic_closure::ClosureProblem
perturb_ca_c_n(core::Size residue, Real value, AngleUnit unit)	protocols::kinematic_closure::ClosureProblem
perturb_lengths()	protocols::kinematic_closure::ClosureProblem
perturb_n_ca(core::Size residue, Real value)	protocols::kinematic_closure::ClosureProblem
perturb_n_ca_c(core::Size residue, Real value, AngleUnit unit)	protocols::kinematic_closure::ClosureProblem
perturb_omega(core::Size residue, Real value, AngleUnit unit)	protocols::kinematic_closure::ClosureProblem
perturb_phi(core::Size residue, Real value, AngleUnit unit)	protocols::kinematic_closure::ClosureProblem
perturb_psi(core::Size residue, Real value, AngleUnit unit)	protocols::kinematic_closure::ClosureProblem
perturb_torsions()	protocols::kinematic_closure::ClosureProblem
perturbed_angles_	protocols::kinematic_closure::ClosureProblem	private
perturbed_lengths_	protocols::kinematic_closure::ClosureProblem	private
perturbed_sequence(utility::vector1< std::string > const &values)	protocols::kinematic_closure::ClosureProblem
perturbed_sequence() const	protocols::kinematic_closure::ClosureProblem
perturbed_sequence_	protocols::kinematic_closure::ClosureProblem	private
perturbed_torsions_	protocols::kinematic_closure::ClosureProblem	private
phi(core::Size residue, AngleUnit unit) const	protocols::kinematic_closure::ClosureProblem
pivot_atoms() const	protocols::kinematic_closure::ClosureProblem
pivot_loop() const	protocols::kinematic_closure::ClosureProblem
pivot_residues() const	protocols::kinematic_closure::ClosureProblem
pivots_	protocols::kinematic_closure::ClosureProblem	private
psi(core::Size residue, AngleUnit unit) const	protocols::kinematic_closure::ClosureProblem
residues() const	protocols::kinematic_closure::ClosureProblem
restore(Pose &pose) const	protocols::kinematic_closure::ClosureProblem
sequence_mutated() const	protocols::kinematic_closure::ClosureProblem
solve() const	protocols::kinematic_closure::ClosureProblem
unperturbed_angles_	protocols::kinematic_closure::ClosureProblem	private
unperturbed_lengths_	protocols::kinematic_closure::ClosureProblem	private
unperturbed_sequence() const	protocols::kinematic_closure::ClosureProblem
unperturbed_sequence_	protocols::kinematic_closure::ClosureProblem	private
unperturbed_torsions_	protocols::kinematic_closure::ClosureProblem	private
unperturbed_xyzs_	protocols::kinematic_closure::ClosureProblem	private
~ClosureProblem() override	protocols::kinematic_closure::ClosureProblem