| acknowledge_state_change(int node_ind, int new_state, SparseMatrixIndex const &new_state_sparse_info, core::PackerEnergy &new_energy) | core::pack::interaction_graph::PDEdge | |
| acknowledge_state_zeroed(int node_ind) | core::pack::interaction_graph::PDEdge | |
| acknowledge_substitution(int substituted_node_index, core::PackerEnergy const curr_state_energy, int nodes_new_state, SparseMatrixIndex const &nodes_new_state_sparse_info) | core::pack::interaction_graph::PDEdge | inline |
| add_to_two_body_energies(ObjexxFCL::FArray2< PackerEnergy > const &res_res_energy_array) override | core::pack::hbonds::BareMinimumPDEdge | |
| core::pack::interaction_graph::PDEdge::add_to_two_body_energies(ObjexxFCL::FArray2< core::PackerEnergy > const &res_res_energy_array) override | core::pack::interaction_graph::PDEdge | virtual |
| add_to_two_body_energy(int const, int const, PackerEnergy const) override | core::pack::hbonds::BareMinimumPDEdge | virtual |
| BareMinimumPDEdge(interaction_graph::InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::hbonds::BareMinimumPDEdge | |
| clear_two_body_energy(int const, int const) override | core::pack::hbonds::BareMinimumPDEdge | inlinevirtual |
| count_dynamic_memory() const override | core::pack::interaction_graph::PDEdge | virtual |
| count_static_memory() const override | core::pack::interaction_graph::PDEdge | virtual |
| declare_energies_final() override | core::pack::hbonds::BareMinimumPDEdge | inlinevirtual |
| declare_energies_final_no_deletion() | core::pack::interaction_graph::PDEdge | protected |
| edge_weight() const | core::pack::interaction_graph::EdgeBase | inline |
| edge_weight(Real) | core::pack::interaction_graph::EdgeBase | protected |
| EdgeBase(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::EdgeBase | |
| FixedBBEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::FixedBBEdge | inline |
| force_aa_neighbors(int node1aa, int node2aa) override | core::pack::interaction_graph::PDEdge | virtual |
| force_all_aa_neighbors() override | core::pack::interaction_graph::PDEdge | virtual |
| get_aa_submatrix_energies(int node1aa, int node2aa) const | core::pack::interaction_graph::PDEdge | |
| get_alternate_state_energy_first_node(int first_node_alt_state, int second_node_orig_state, SparseMatrixIndex const &second_node_orig_state_sparse_info, int first_node_state_offset_minus_1, int second_node_curr_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table) | core::pack::interaction_graph::PDEdge | inlinestatic |
| get_alternate_state_energy_second_node(int first_node_orig_state, int second_node_alt_state, SparseMatrixIndex const &first_node_orig_state_sparse_info, SparseMatrixIndex const &second_node_alternate_state_sparse_info, int second_node_alt_state_num_states_per_aatype, int aa_neighbor_offset, ObjexxFCL::FArray1< core::PackerEnergy > &edge_energy_table) | core::pack::interaction_graph::PDEdge | inlinestatic |
| get_current_two_body_energy() | core::pack::interaction_graph::PDEdge | |
| get_edge_table_ptr() | core::pack::interaction_graph::PDEdge | |
| get_edges_position_in_nodes_edge_vector(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_first_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node(int index) | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_node_index(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_num_states_for_node(int index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| get_offsets_for_aatypes() | core::pack::interaction_graph::PDEdge | |
| get_other_ind(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_other_node(int callers_index) const | core::pack::interaction_graph::EdgeBase | |
| get_owner() const | core::pack::interaction_graph::EdgeBase | inline |
| get_owner() | core::pack::interaction_graph::EdgeBase | inline |
| get_second_node_ind() const | core::pack::interaction_graph::EdgeBase | |
| get_second_node_num_states_per_aa() | core::pack::interaction_graph::PDEdge | |
| get_sparse_aa_info(int node1aa, int node2aa) const override | core::pack::interaction_graph::PDEdge | virtual |
| get_two_body_energy(int const, int const ) const override | core::pack::hbonds::BareMinimumPDEdge | inlinevirtual |
| get_two_body_table_size() const | core::pack::interaction_graph::PDEdge | |
| mark_edge_for_deletion() | core::pack::interaction_graph::EdgeBase | inlineprotected |
| marked_for_deletion() const | core::pack::interaction_graph::EdgeBase | inline |
| pd_edge_table_all_zeros() const | core::pack::interaction_graph::PDEdge | protected |
| PDEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::PDEdge | |
| PrecomputedPairEnergiesEdge(InteractionGraphBase *owner, int first_node_ind, int second_node_ind) | core::pack::interaction_graph::PrecomputedPairEnergiesEdge | inline |
| prepare_for_simulated_annealing() override | core::pack::hbonds::BareMinimumPDEdge | inlinevirtual |
| prepare_for_simulated_annealing_no_deletion() | core::pack::interaction_graph::PDEdge | protected |
| same_edge(int node1, int node2) const | core::pack::interaction_graph::EdgeBase | |
| set_edge_weight(Real weight) override | core::pack::interaction_graph::PDEdge | virtual |
| set_pos_in_node_edgevector(int callers_index, int position) | core::pack::interaction_graph::EdgeBase | |
| set_pos_in_owners_list(std::list< EdgeBase * >::iterator edge_iterator) | core::pack::interaction_graph::EdgeBase | |
| set_sparse_aa_info(ObjexxFCL::FArray2_bool const &sparse_conn_info) override | core::pack::interaction_graph::PDEdge | virtual |
| set_two_body_energy(int const rot1, int const rot2, PackerEnergy const twobody) override | core::pack::hbonds::BareMinimumPDEdge | inlinevirtual |
| two_body_energies() | core::pack::interaction_graph::PDEdge | inlineprotected |
| which_node(int node_index) const | core::pack::interaction_graph::EdgeBase | inlineprotected |
| ~BareMinimumPDEdge() override | core::pack::hbonds::BareMinimumPDEdge | |
| ~EdgeBase() | core::pack::interaction_graph::EdgeBase | virtual |
| ~FixedBBEdge() override | core::pack::interaction_graph::FixedBBEdge | inline |
| ~PDEdge() override | core::pack::interaction_graph::PDEdge | |
| ~PrecomputedPairEnergiesEdge() override | core::pack::interaction_graph::PrecomputedPairEnergiesEdge | inline |
1.8.7