protocols::match::downstream::RigidLigandBuilder Member List

This is the complete list of members for protocols::match::downstream::RigidLigandBuilder, including all inherited members.

active_site_grid() const	protocols::match::downstream::DownstreamBuilder	inlineprotected
active_site_grid_set() const	protocols::match::downstream::DownstreamBuilder	inlineprotected
atom1_atom2_atom3_angle() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom1_atom2_distance() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom1_belongs_in_active_site() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom1_radius() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom2_atom3_distance() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom2_belongs_in_active_site() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom2_radius() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom3_belongs_in_active_site() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom3_radius() const override	protocols::match::downstream::RigidLigandBuilder	virtual
atom_radii_	protocols::match::downstream::RigidLigandBuilder	private
atom_required_in_active_site_	protocols::match::downstream::RigidLigandBuilder	private
AtomID typedef	protocols::match::downstream::DownstreamBuilder
atoms_123_	protocols::match::downstream::RigidLigandBuilder	private
ats123_reqd_in_active_site_	protocols::match::downstream::RigidLigandBuilder	private
bbgrid() const	protocols::match::downstream::DownstreamBuilder	inlineprotected
bbgrid_set() const	protocols::match::downstream::DownstreamBuilder	inlineprotected
build(HTReal const &atom3_frame, core::Size const scaffold_build_point_id, core::Size const upstream_conf_id, core::Size const external_geometry_id, core::conformation::Residue const &upstream_residue) const override	protocols::match::downstream::RigidLigandBuilder	virtual
clone() const override	protocols::match::downstream::RigidLigandBuilder	virtual
compatible(Hit const &my_hit, DownstreamBuilder const &other, Hit const &other_hit, bool first_dispatch=true) const override	protocols::match::downstream::RigidLigandBuilder	virtual
compatible(Hit const &my_hit, RigidLigandBuilder const &other, Hit const &other_hit, bool first_dispatch=true) const override	protocols::match::downstream::RigidLigandBuilder	virtual
protocols::match::downstream::DownstreamBuilder::compatible(Hit const &my_hit, LigandConformerBuilder const &other, Hit const &other_hit, bool first_dispatch=true) const	protocols::match::downstream::DownstreamBuilder	virtual
coordinates_from_hit(Hit const &hit, utility::vector1< AtomID > const &atom_indices, utility::vector1< Vector > &atom_coords) const override	protocols::match::downstream::RigidLigandBuilder	virtual
downstream_pose_from_hit(Hit const &hit) const override	protocols::match::downstream::RigidLigandBuilder	virtual
downstream_restype_	protocols::match::downstream::RigidLigandBuilder	private
DownstreamBuilder()	protocols::match::downstream::DownstreamBuilder
DownstreamBuilder(DownstreamBuilder const &)	protocols::match::downstream::DownstreamBuilder
get_lig_conformers(core::Size conf_id) const override	protocols::match::downstream::RigidLigandBuilder	virtual
get_upstream_restype() const override	protocols::match::downstream::RigidLigandBuilder	virtual
hits_potentially_incompatible() const override	protocols::match::downstream::RigidLigandBuilder	inlinevirtual
HTReal typedef	protocols::match::downstream::DownstreamBuilder
ignore_h_collisions(bool setting)	protocols::match::downstream::RigidLigandBuilder
ignore_h_collisions_	protocols::match::downstream::RigidLigandBuilder	private
initialize_from_residue(core::Size atom1, core::Size atom2, core::Size atom3, core::Size orientation_atom1, core::Size orientation_atom2, core::Size orientation_atom3, core::conformation::Residue const &residue)	protocols::match::downstream::RigidLigandBuilder
initialize_upstream_nonbonded_min_separation_d2()	protocols::match::downstream::RigidLigandBuilder	private
initialize_upstream_residue(core::chemical::ResidueTypeCOP upstream_res, core::scoring::etable::count_pair::CountPairFunctionCOP count_pair=nullptr)	protocols::match::downstream::RigidLigandBuilder
lig_conformers_	protocols::match::downstream::RigidLigandBuilder	private
min_sep_d2_from_upstream_atoms_	protocols::match::downstream::RigidLigandBuilder	private
n_possible_hits_per_at3frame() const override	protocols::match::downstream::RigidLigandBuilder	virtual
non_collision_detection_atoms_reqd_in_active_site_	protocols::match::downstream::RigidLigandBuilder	private
occ_space() const	protocols::match::downstream::DownstreamBuilder	inlineprotected
occ_space_set() const	protocols::match::downstream::DownstreamBuilder	inlineprotected
orientation_atoms_	protocols::match::downstream::RigidLigandBuilder	private
parent typedef	protocols::match::downstream::RigidLigandBuilder
radii_123_	protocols::match::downstream::RigidLigandBuilder	private
Real typedef	protocols::match::downstream::DownstreamBuilder
require_atom_to_reside_in_active_site(core::id::AtomID const &id) override	protocols::match::downstream::RigidLigandBuilder	virtual
RigidLigandBuilder()	protocols::match::downstream::RigidLigandBuilder
RigidLigandBuilder(RigidLigandBuilder const &)	protocols::match::downstream::RigidLigandBuilder
set_active_site_grid(ActiveSiteGridCOP active_site_grid)	protocols::match::downstream::DownstreamBuilder
set_bb_grid(BumpGridCOP bbgrid) override	protocols::match::downstream::RigidLigandBuilder	virtual
set_occupied_space_hash(OccupiedSpaceHashCOP occ_space)	protocols::match::downstream::DownstreamBuilder
upstream_restype_	protocols::match::downstream::RigidLigandBuilder	private
Vector typedef	protocols::match::downstream::DownstreamBuilder
~DownstreamBuilder() override	protocols::match::downstream::DownstreamBuilder
~RigidLigandBuilder() override	protocols::match::downstream::RigidLigandBuilder