Rosetta: core::import_pose::pose_stream::LazySilentFilePoseInputStream Class Reference

#include <LazySilentFilePoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::LazySilentFilePoseInputStream:

Inheritance graph

Public Member Functions
	LazySilentFilePoseInputStream (utility::vector1< FileName > const &fns)

	LazySilentFilePoseInputStream ()

	~LazySilentFilePoseInputStream () override

utility::vector1< FileName > const &	filenames () const

bool	has_another_pose () override

void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set, bool const metapatches=true) override

void	fill_pose (core::pose::Pose &, bool const metapatches=true) override

void	reset () override

Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()

	~PoseInputStream () override

virtual utility::vector1 < core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)

void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Types
typedef std::string	string

typedef utility::file::FileName	FileName

Private Attributes
utility::vector1< FileName >	filenames_

utility::vector1< FileName > ::const_iterator	current_filename_

core::io::silent::SilentFileData	sfd_

core::io::silent::SilentFileData::iterator	current_struct_

Member Typedef Documentation

typedef utility::file::FileName core::import_pose::pose_stream::LazySilentFilePoseInputStream::FileName

private

typedef std::string core::import_pose::pose_stream::LazySilentFilePoseInputStream::string

private

Constructor & Destructor Documentation

core::import_pose::pose_stream::LazySilentFilePoseInputStream::LazySilentFilePoseInputStream ( utility::vector1< FileName > const & fns )

References core::io::silent::SilentFileData::begin(), current_filename_, current_struct_, core::io::silent::SilentFileData::read_file(), and sfd_.

core::import_pose::pose_stream::LazySilentFilePoseInputStream::LazySilentFilePoseInputStream ( )

References reset().

core::import_pose::pose_stream::LazySilentFilePoseInputStream::~LazySilentFilePoseInputStream ( )

inlineoverride

Member Function Documentation

utility::vector1< FileName > const & core::import_pose::pose_stream::LazySilentFilePoseInputStream::filenames ( ) const

References filenames_.

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose	(	core::pose::Pose &	pose,
		core::chemical::ResidueTypeSet const &	residue_set,
		bool const	metapatches = `true`
	)

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References core::io::silent::SilentFileData::begin(), core::io::silent::SilentFileData::clear(), current_filename_, current_struct_, core::pose::Pose::data(), core::pack::interaction_graph::debug, core::io::silent::SilentFileData::end(), filenames_, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), core::io::silent::SilentFileData::read_file(), core::pose::setPoseExtraScore(), sfd_, and core::import_pose::pose_stream::tr().

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose	(	core::pose::Pose &	pose,
		bool const	metapatches = `true`
	)

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References core::io::silent::SilentFileData::begin(), core::io::silent::SilentFileData::clear(), current_filename_, current_struct_, core::pose::Pose::data(), core::pack::interaction_graph::debug, core::io::silent::SilentFileData::end(), filenames_, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), core::io::silent::SilentFileData::read_file(), core::pose::setPoseExtraScore(), sfd_, and core::import_pose::pose_stream::tr().

bool core::import_pose::pose_stream::LazySilentFilePoseInputStream::has_another_pose ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_filename_, current_struct_, core::io::silent::SilentFileData::end(), filenames_, and sfd_.

Referenced by fill_pose().

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::reset ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_filename_, current_struct_, core::io::silent::SilentFileData::end(), filenames_, and sfd_.

Referenced by LazySilentFilePoseInputStream().

Member Data Documentation

utility::vector1< FileName >::const_iterator core::import_pose::pose_stream::LazySilentFilePoseInputStream::current_filename_

private

Referenced by fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

core::io::silent::SilentFileData::iterator core::import_pose::pose_stream::LazySilentFilePoseInputStream::current_struct_

private

Referenced by fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

utility::vector1< FileName > core::import_pose::pose_stream::LazySilentFilePoseInputStream::filenames_

private

Referenced by filenames(), fill_pose(), has_another_pose(), and reset().

core::io::silent::SilentFileData core::import_pose::pose_stream::LazySilentFilePoseInputStream::sfd_

private

Referenced by fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

The documentation for this class was generated from the following files:

src/core/import_pose/pose_stream/LazySilentFilePoseInputStream.hh
src/core/import_pose/pose_stream/LazySilentFilePoseInputStream.cc