protocols::denovo_design::components::RandomTorsionPoseFolder Class Reference

Folds a pose using random phi/psi torsions. More...

#include <RandomTorsionPoseFolder.hh>

Inheritance diagram for protocols::denovo_design::components::RandomTorsionPoseFolder:

Public Types
typedef protocols::denovo_design::components::PoseFolder	PoseFolder
typedef protocols::denovo_design::components::PoseFolderOP	PoseFolderOP

Public Member Functions
	RandomTorsionPoseFolder ()
	~RandomTorsionPoseFolder () override
PoseFolderOP	clone () const override
void	apply (core::pose::Pose &pose, core::select::residue_selector::ResidueSubset const &movable, protocols::loops::Loops const &loops) const override
	performs folding More...
Public Member Functions inherited from protocols::denovo_design::components::PoseFolder
	PoseFolder (std::string const &type)
	Default constructor. More...
	~PoseFolder () override
	Destructor. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
std::string const &	type () const

Static Public Member Functions
static std::string	class_name ()

Protected Member Functions
void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override

Detailed Description

Folds a pose using random phi/psi torsions.

Member Typedef Documentation

typedef protocols::denovo_design::components::PoseFolder protocols::denovo_design::components::RandomTorsionPoseFolder::PoseFolder

typedef protocols::denovo_design::components::PoseFolderOP protocols::denovo_design::components::RandomTorsionPoseFolder::PoseFolderOP

Constructor & Destructor Documentation

protocols::denovo_design::components::RandomTorsionPoseFolder::RandomTorsionPoseFolder

(

)

protocols::denovo_design::components::RandomTorsionPoseFolder::~RandomTorsionPoseFolder ( )

overridedefault

Member Function Documentation

void protocols::denovo_design::components::RandomTorsionPoseFolder::apply ( core::pose::Pose &  pose, core::select::residue_selector::ResidueSubset const &  movable, protocols::loops::Loops const &  loops  ) const

overridevirtual

performs folding

Parameters

pose	- The pose to be folded, with all residues added. The pose should be prepared with any necessary cutpoints added before giving to the PoseFolder. Torsions in the pose should be adjusted, and no residues should be added or removed.
movable	- Subset of residues for which new backbone conformations will be sampled. Residues specified as 'True' in movable must also be present in one or more Loops in order to be folded. Movable's size must match pose.size()
loops	- Loops to be folded. Cutpoints specified here must be match the cutpoints found in the pose. Residues not within any loop should not be folded. Residues contained in a loop but not in the movable set should not be folded.

Exceptions

EXCN_Fold

if anything goes wrong in folding. Derived classes should throw this.

Implements protocols::denovo_design::components::PoseFolder.

References protocols::denovo_design::components::check_residue_subset(), core::scoring::rg, core::pose::Pose::set_phi(), core::pose::Pose::set_psi(), and protocols::TR().

std::string protocols::denovo_design::components::RandomTorsionPoseFolder::class_name ( )

static

Referenced by protocols::denovo_design::components::check_residue(), and protocols::denovo_design::movers::FoldArchitectMover::parse_folder().

RandomTorsionPoseFolder::PoseFolderOP protocols::denovo_design::components::RandomTorsionPoseFolder::clone ( ) const

overridevirtual

Implements protocols::denovo_design::components::PoseFolder.

void protocols::denovo_design::components::RandomTorsionPoseFolder::parse_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  )

overrideprotectedvirtual

Implements protocols::denovo_design::components::PoseFolder.

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/components/RandomTorsionPoseFolder.hh
• src/protocols/denovo_design/components/RandomTorsionPoseFolder.cc