core::scoring::motif::ResPairMotifQuery Class Reference

#include <motif_hash_stuff.hh>

Public Member Functions
	ResPairMotifQuery (core::pose::Pose const &pose1)
	ResPairMotifQuery (core::pose::Pose const &pose1, core::pose::Pose const &pose2)
core::pose::PoseCOP	pose1 () const
core::pose::PoseCOP	pose2 () const
numeric::geometry::hashing::xyzStripeHash const *	inter_clash1 () const
numeric::geometry::hashing::xyzStripeHash const *	inter_clash2 () const
numeric::geometry::hashing::xyzStripeHash const *&	inter_clash1 ()
numeric::geometry::hashing::xyzStripeHash const *&	inter_clash2 ()
Xform &	inter_clash1_xform ()
Xform &	inter_clash2_xform ()
Xform const &	inter_clash1_xform () const
Xform const &	inter_clash2_xform () const
bool const &	auto_clash () const
bool &	auto_clash ()
bool const &	interface_only () const
bool &	interface_only ()
Real const &	match_radius () const
Real &	match_radius ()
Real const &	match_chi_rmsd () const
Real &	match_chi_rmsd ()
Real const &	max_ca_dis2 () const
Real &	max_ca_dis2 ()
Bools const &	useres1 () const
Bools &	useres1 ()
Bools const &	useres2 () const
Bools &	useres2 ()
Bools const &	useres1_ph () const
Bools &	useres1_ph ()
Bools const &	useres2_ph () const
Bools &	useres2_ph ()
Bools const &	useres1_po () const
Bools &	useres1_po ()
Bools const &	useres2_po () const
Bools &	useres2_po ()
bool const &	match_ss1 () const
bool &	match_ss1 ()
bool const &	match_ss2 () const
bool &	match_ss2 ()
bool const &	match_aa1 () const
bool &	match_aa1 ()
bool const &	match_aa2 () const
bool &	match_aa2 ()
bool const &	clash_check () const
bool &	clash_check ()
MotifMatchOverlapReq const &	overlap1 () const
MotifMatchOverlapReq &	overlap1 ()
MotifMatchOverlapReq const &	overlap2 () const
MotifMatchOverlapReq &	overlap2 ()
void	copy_opts_swapped (ResPairMotifQuery const &other)

Private Member Functions
void	init (core::pose::Pose const &pose1, core::pose::Pose const &pose2)
	ResPairMotifQuery ()

Private Attributes
core::pose::PoseCOP	pose1_
core::pose::PoseCOP	pose2_
numeric::geometry::hashing::xyzStripeHash const *	inter_clash1_
numeric::geometry::hashing::xyzStripeHash const *	inter_clash2_
Xform	inter_clash1_xform_
Xform	inter_clash2_xform_
MotifMatchOverlapReq	overlap1_
MotifMatchOverlapReq	overlap2_
bool	auto_clash_
bool	interface_only_
bool	match_ss1_
bool	match_aa1_
bool	match_ss2_
bool	match_aa2_
bool	clash_check_
Real	match_radius_
Real	max_ca_dis2_
Real	match_chi_rmsd_
Bools	useres1_
Bools	useres2_
Bools	useres1_ph_
Bools	useres2_ph_
Bools	useres1_po_
Bools	useres2_po_

Friends
class	MotifHash
std::ostream &	operator<< (std::ostream &out, ResPairMotifQuery const &opt)

Constructor & Destructor Documentation

core::scoring::motif::ResPairMotifQuery::ResPairMotifQuery ( )

inlineprivate

core::scoring::motif::ResPairMotifQuery::ResPairMotifQuery ( core::pose::Pose const &  pose1 )

inline

References init().

core::scoring::motif::ResPairMotifQuery::ResPairMotifQuery ( core::pose::Pose const &  pose1, core::pose::Pose const &  pose2  )

inline

References init().

Member Function Documentation

bool const& core::scoring::motif::ResPairMotifQuery::auto_clash ( ) const

inline

References auto_clash_.

Referenced by copy_opts_swapped().

bool& core::scoring::motif::ResPairMotifQuery::auto_clash ( )

inline

References auto_clash_.

bool const& core::scoring::motif::ResPairMotifQuery::clash_check ( ) const

inline

References clash_check_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

bool& core::scoring::motif::ResPairMotifQuery::clash_check ( )

inline

References clash_check_.

void core::scoring::motif::ResPairMotifQuery::copy_opts_swapped

(

ResPairMotifQuery const &

other

)

References auto_clash(), clash_check(), inter_clash1_, inter_clash1_xform_, inter_clash2_, inter_clash2_xform_, interface_only(), match_aa1(), match_aa2(), match_chi_rmsd(), match_radius(), match_ss1(), match_ss2(), max_ca_dis2(), overlap1(), overlap2(), useres1(), useres1_ph(), useres1_po(), useres2(), useres2_ph(), and useres2_po().

Referenced by core::scoring::motif::MotifHashManager::get_matching_motifs().

void core::scoring::motif::ResPairMotifQuery::init ( core::pose::Pose const &  pose1, core::pose::Pose const &  pose2  )

private

References protocols::cluster::calibur::aa, auto_clash_, core::scoring::dssp::Dssp::insert_ss_into_pose(), inter_clash1_, inter_clash2_, interface_only_, core::pose::symmetry::is_symmetric(), match_aa1_, match_aa2_, core::scoring::motif::MATCH_ANY, match_chi_rmsd_, match_radius_, match_ss1_, match_ss2_, max_ca_dis2_, core::scoring::motif::MOTIF_HASH_CART_SIZE, overlap1_, overlap2_, pose1_, pose2_, core::pose::Pose::secstruct(), core::pose::symmetry::symmetry_info(), useres1_, useres1_ph_, useres1_po_, useres2_, useres2_ph_, and useres2_po_.

Referenced by ResPairMotifQuery().

numeric::geometry::hashing::xyzStripeHash const* core::scoring::motif::ResPairMotifQuery::inter_clash1 ( ) const

inline

References inter_clash1_.

numeric::geometry::hashing::xyzStripeHash const* & core::scoring::motif::ResPairMotifQuery::inter_clash1 ( )

inline

References inter_clash1_.

Xform& core::scoring::motif::ResPairMotifQuery::inter_clash1_xform ( )

inline

References inter_clash1_xform_.

Xform const& core::scoring::motif::ResPairMotifQuery::inter_clash1_xform ( ) const

inline

References inter_clash1_xform_.

numeric::geometry::hashing::xyzStripeHash const* core::scoring::motif::ResPairMotifQuery::inter_clash2 ( ) const

inline

References inter_clash2_.

numeric::geometry::hashing::xyzStripeHash const* & core::scoring::motif::ResPairMotifQuery::inter_clash2 ( )

inline

References inter_clash2_.

Xform& core::scoring::motif::ResPairMotifQuery::inter_clash2_xform ( )

inline

References inter_clash2_xform_.

Xform const& core::scoring::motif::ResPairMotifQuery::inter_clash2_xform ( ) const

inline

References inter_clash2_xform_.

bool const& core::scoring::motif::ResPairMotifQuery::interface_only ( ) const

inline

References interface_only_.

Referenced by copy_opts_swapped(), protocols::legacy_sewing::scoring::LegacyMotifScorer::dump_motif(), and core::scoring::motif::MotifHash::get_matching_motifs().

bool& core::scoring::motif::ResPairMotifQuery::interface_only ( )

inline

References interface_only_.

bool const& core::scoring::motif::ResPairMotifQuery::match_aa1 ( ) const

inline

References match_aa1_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

bool& core::scoring::motif::ResPairMotifQuery::match_aa1 ( )

inline

References match_aa1_.

bool const& core::scoring::motif::ResPairMotifQuery::match_aa2 ( ) const

inline

References match_aa2_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

bool& core::scoring::motif::ResPairMotifQuery::match_aa2 ( )

inline

References match_aa2_.

Real const& core::scoring::motif::ResPairMotifQuery::match_chi_rmsd ( ) const

inline

References match_chi_rmsd_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

Real& core::scoring::motif::ResPairMotifQuery::match_chi_rmsd ( )

inline

References match_chi_rmsd_.

Real const& core::scoring::motif::ResPairMotifQuery::match_radius ( ) const

inline

References match_radius_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

Real& core::scoring::motif::ResPairMotifQuery::match_radius ( )

inline

References match_radius_.

bool const& core::scoring::motif::ResPairMotifQuery::match_ss1 ( ) const

inline

References match_ss1_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

bool& core::scoring::motif::ResPairMotifQuery::match_ss1 ( )

inline

References match_ss1_.

bool const& core::scoring::motif::ResPairMotifQuery::match_ss2 ( ) const

inline

References match_ss2_.

Referenced by copy_opts_swapped().

bool& core::scoring::motif::ResPairMotifQuery::match_ss2 ( )

inline

References match_ss2_.

Real const& core::scoring::motif::ResPairMotifQuery::max_ca_dis2 ( ) const

inline

References max_ca_dis2_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

Real& core::scoring::motif::ResPairMotifQuery::max_ca_dis2 ( )

inline

References max_ca_dis2_.

MotifMatchOverlapReq const& core::scoring::motif::ResPairMotifQuery::overlap1 ( ) const

inline

References overlap1_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

MotifMatchOverlapReq& core::scoring::motif::ResPairMotifQuery::overlap1 ( )

inline

References overlap1_.

MotifMatchOverlapReq const& core::scoring::motif::ResPairMotifQuery::overlap2 ( ) const

inline

References overlap2_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

MotifMatchOverlapReq& core::scoring::motif::ResPairMotifQuery::overlap2 ( )

inline

References overlap2_.

core::pose::PoseCOP core::scoring::motif::ResPairMotifQuery::pose1 ( ) const

inline

References pose1_.

Referenced by core::scoring::motif::MotifHash::get_matching_motifs(), and core::scoring::motif::MotifHashManager::get_matching_motifs().

core::pose::PoseCOP core::scoring::motif::ResPairMotifQuery::pose2 ( ) const

inline

References pose2_.

Referenced by core::scoring::motif::MotifHash::get_matching_motifs(), and core::scoring::motif::MotifHashManager::get_matching_motifs().

Bools const& core::scoring::motif::ResPairMotifQuery::useres1 ( ) const

inline

References useres1_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

Bools& core::scoring::motif::ResPairMotifQuery::useres1 ( )

inline

References useres1_.

Bools const& core::scoring::motif::ResPairMotifQuery::useres1_ph ( ) const

inline

References useres1_ph_.

Referenced by copy_opts_swapped().

Bools& core::scoring::motif::ResPairMotifQuery::useres1_ph ( )

inline

References useres1_ph_.

Bools const& core::scoring::motif::ResPairMotifQuery::useres1_po ( ) const

inline

References useres1_po_.

Referenced by copy_opts_swapped().

Bools& core::scoring::motif::ResPairMotifQuery::useres1_po ( )

inline

References useres1_po_.

Bools const& core::scoring::motif::ResPairMotifQuery::useres2 ( ) const

inline

References useres2_.

Referenced by copy_opts_swapped(), and core::scoring::motif::MotifHash::get_matching_motifs().

Bools& core::scoring::motif::ResPairMotifQuery::useres2 ( )

inline

References useres2_.

Bools const& core::scoring::motif::ResPairMotifQuery::useres2_ph ( ) const

inline

References useres2_ph_.

Referenced by copy_opts_swapped().

Bools& core::scoring::motif::ResPairMotifQuery::useres2_ph ( )

inline

References useres2_ph_.

Bools const& core::scoring::motif::ResPairMotifQuery::useres2_po ( ) const

inline

References useres2_po_.

Referenced by copy_opts_swapped().

Bools& core::scoring::motif::ResPairMotifQuery::useres2_po ( )

inline

References useres2_po_.

Friends And Related Function Documentation

friend class MotifHash

friend

std::ostream& operator<< ( std::ostream &  out, ResPairMotifQuery const &  opt  )

friend

Member Data Documentation

bool core::scoring::motif::ResPairMotifQuery::auto_clash_

private

Referenced by auto_clash(), core::scoring::motif::MotifHash::get_matching_motifs(), init(), and core::scoring::motif::operator<<().

bool core::scoring::motif::ResPairMotifQuery::clash_check_

private

Referenced by clash_check().

numeric::geometry::hashing::xyzStripeHash const* core::scoring::motif::ResPairMotifQuery::inter_clash1_

private

Referenced by copy_opts_swapped(), init(), and inter_clash1().

Xform core::scoring::motif::ResPairMotifQuery::inter_clash1_xform_

private

Referenced by copy_opts_swapped(), and inter_clash1_xform().

numeric::geometry::hashing::xyzStripeHash const* core::scoring::motif::ResPairMotifQuery::inter_clash2_

private

Referenced by copy_opts_swapped(), init(), and inter_clash2().

Xform core::scoring::motif::ResPairMotifQuery::inter_clash2_xform_

private

Referenced by copy_opts_swapped(), and inter_clash2_xform().

bool core::scoring::motif::ResPairMotifQuery::interface_only_

private

Referenced by init(), interface_only(), and core::scoring::motif::operator<<().

bool core::scoring::motif::ResPairMotifQuery::match_aa1_

private

Referenced by init(), and match_aa1().

bool core::scoring::motif::ResPairMotifQuery::match_aa2_

private

Referenced by init(), and match_aa2().

Real core::scoring::motif::ResPairMotifQuery::match_chi_rmsd_

private

Referenced by init(), and match_chi_rmsd().

Real core::scoring::motif::ResPairMotifQuery::match_radius_

private

Referenced by init(), match_radius(), and core::scoring::motif::operator<<().

bool core::scoring::motif::ResPairMotifQuery::match_ss1_

private

Referenced by init(), and match_ss1().

bool core::scoring::motif::ResPairMotifQuery::match_ss2_

private

Referenced by init(), and match_ss2().

Real core::scoring::motif::ResPairMotifQuery::max_ca_dis2_

private

Referenced by init(), and max_ca_dis2().

MotifMatchOverlapReq core::scoring::motif::ResPairMotifQuery::overlap1_

private

Referenced by init(), and overlap1().

MotifMatchOverlapReq core::scoring::motif::ResPairMotifQuery::overlap2_

private

Referenced by init(), and overlap2().

core::pose::PoseCOP core::scoring::motif::ResPairMotifQuery::pose1_

private

Referenced by core::scoring::motif::MotifHash::get_matching_motifs(), init(), core::scoring::motif::operator<<(), and pose1().

core::pose::PoseCOP core::scoring::motif::ResPairMotifQuery::pose2_

private

Referenced by core::scoring::motif::MotifHash::get_matching_motifs(), init(), core::scoring::motif::operator<<(), and pose2().

Bools core::scoring::motif::ResPairMotifQuery::useres1_

private

Referenced by core::scoring::motif::MotifHash::get_matching_motifs(), init(), and useres1().

Bools core::scoring::motif::ResPairMotifQuery::useres1_ph_

private

Referenced by init(), and useres1_ph().

Bools core::scoring::motif::ResPairMotifQuery::useres1_po_

private

Referenced by init(), and useres1_po().

Bools core::scoring::motif::ResPairMotifQuery::useres2_

private

Referenced by core::scoring::motif::MotifHash::get_matching_motifs(), init(), and useres2().

Bools core::scoring::motif::ResPairMotifQuery::useres2_ph_

private

Referenced by init(), and useres2_ph().

Bools core::scoring::motif::ResPairMotifQuery::useres2_po_

private

Referenced by init(), and useres2_po().

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The documentation for this class was generated from the following files:

• src/core/scoring/motif/motif_hash_stuff.hh
• src/core/scoring/motif/motif_hash_stuff.cc