| AA typedef | core::pack::dunbrack::RotamerLibrary | |
| aa_libraries_ | core::pack::dunbrack::RotamerLibrary | private |
| add_residue_library(AA const &aa, rotamers::SingleResidueRotamerLibraryCOP rot_lib) | core::pack::dunbrack::RotamerLibrary | private |
| best_rotamer_energy(Residue const &rsd, pose::Pose const &pose, bool curr_rotamer_only, RotamerLibraryScratchSpace &scratch) const | core::pack::dunbrack::RotamerLibrary | |
| binary_is_up_to_date(utility::io::izstream &binlib) const | core::pack::dunbrack::RotamerLibrary | private |
| binary_is_up_to_date_02(utility::io::izstream &binlib) const | core::pack::dunbrack::RotamerLibrary | private |
| binary_is_up_to_date_10(utility::io::izstream &binlib) const | core::pack::dunbrack::RotamerLibrary | private |
| create_fa_dunbrack_libraries() | core::pack::dunbrack::RotamerLibrary | private |
| create_fa_dunbrack_libraries_02_from_ASCII() | core::pack::dunbrack::RotamerLibrary | private |
| create_fa_dunbrack_libraries_02_from_binary() | core::pack::dunbrack::RotamerLibrary | private |
| create_fa_dunbrack_libraries_10_from_ASCII() | core::pack::dunbrack::RotamerLibrary | private |
| create_fa_dunbrack_libraries_10_from_binary() | core::pack::dunbrack::RotamerLibrary | private |
| create_fa_dunbrack_libraries_from_ASCII() | core::pack::dunbrack::RotamerLibrary | private |
| create_fa_dunbrack_libraries_from_binary() | core::pack::dunbrack::RotamerLibrary | private |
| create_rotameric_dunlib(chemical::ResidueType const &rt, Size const n_chi, Size const n_bb, utility::io::izstream &library, bool dun02, std::string &next_aa_in_library, bool first_three_letter_code_already_read) const | core::pack::dunbrack::RotamerLibrary | private |
| create_rotameric_dunlib(chemical::ResidueType const &rt, Size const n_chi, Size const n_bb, bool const dun02, bool const reduced_resolution_library=false) const | core::pack::dunbrack::RotamerLibrary | private |
| create_rotameric_dunlib(chemical::ResidueType const &rt, Size const n_chi, bool dun02) const | core::pack::dunbrack::RotamerLibrary | private |
| create_semi_rotameric_dunlib(chemical::ResidueType const &rt, Size const nchi, Size const nbb, bool const use_bbind_rnchi_scoring, bool const use_bbind_rnchi_sampling, bool const nrchi_is_symmetric, Real const nrchi_start_angle, utility::io::izstream &rotamer_definitions, utility::io::izstream ®ular_library, utility::io::izstream &continuous_minimization_bbdep) const | core::pack::dunbrack::RotamerLibrary | private |
| create_semi_rotameric_dunlib(chemical::ResidueType const &rt, Size const nchi, bool const use_bbind_rnchi_scoring, bool const use_bbind_rnchi_sampling, bool const nrchi_is_symmetric, Real const nrchi_start_angle) const | core::pack::dunbrack::RotamerLibrary | private |
| create_semi_rotameric_dunlib(chemical::ResidueType const &rt, Size const nchi, Size const nbb, bool const use_bbind_rnchi_scoring, bool const use_bbind_rnchi_sampling, bool const nrchi_is_symmetric, Real const nrchi_start_angle) const | core::pack::dunbrack::RotamerLibrary | private |
| create_srdl(chemical::ResidueType const &rt, DunbrackAAParameterSet const &ps, bool const reduced_resolution_library=false) const | core::pack::dunbrack::RotamerLibrary | private |
| current_binary_format_version_id_02() const | core::pack::dunbrack::RotamerLibrary | private |
| current_binary_format_version_id_10() const | core::pack::dunbrack::RotamerLibrary | private |
| decide_read_from_binary() const | core::pack::dunbrack::RotamerLibrary | |
| decide_read_from_binary_02() const | core::pack::dunbrack::RotamerLibrary | private |
| decide_read_from_binary_10() const | core::pack::dunbrack::RotamerLibrary | private |
| decide_write_binary() const | core::pack::dunbrack::RotamerLibrary | private |
| decide_write_binary_02() const | core::pack::dunbrack::RotamerLibrary | private |
| decide_write_binary_10() const | core::pack::dunbrack::RotamerLibrary | private |
| dont_rewrite_dunbrack_database_ | core::pack::dunbrack::RotamerLibrary | private |
| dun02_file_ | core::pack::dunbrack::RotamerLibrary | private |
| dun10_ | core::pack::dunbrack::RotamerLibrary | private |
| dun10_dir_ | core::pack::dunbrack::RotamerLibrary | private |
| entropy_correction_ | core::pack::dunbrack::RotamerLibrary | private |
| get_binary_name() const | core::pack::dunbrack::RotamerLibrary | |
| get_binary_name_02(bool for_writing=false) const | core::pack::dunbrack::RotamerLibrary | private |
| get_binary_name_10(bool for_writing=false) const | core::pack::dunbrack::RotamerLibrary | private |
| get_library_by_aa(chemical::AA const &aa) const | core::pack::dunbrack::RotamerLibrary | |
| get_library_name_02() const | core::pack::dunbrack::RotamerLibrary | private |
| get_library_name_10() const | core::pack::dunbrack::RotamerLibrary | private |
| initialize_dun02_aa_parameters(utility::vector1< Size > &nchi_for_aa, utility::vector1< Size > &nbb_for_aa, Size &n_rotameric_aas) | core::pack::dunbrack::RotamerLibrary | static |
| initialize_from_options(utility::options::OptionCollection const &options) | core::pack::dunbrack::RotamerLibrary | private |
| library_iterator typedef | core::pack::dunbrack::RotamerLibrary | private |
| no_binary_dunlib_ | core::pack::dunbrack::RotamerLibrary | private |
| operator=(RotamerLibrary const &) | core::pack::dunbrack::RotamerLibrary | private |
| prob_buried_ | core::pack::dunbrack::RotamerLibrary | private |
| prob_buried_semi_ | core::pack::dunbrack::RotamerLibrary | private |
| prob_nonburied_ | core::pack::dunbrack::RotamerLibrary | private |
| prob_nonburied_semi_ | core::pack::dunbrack::RotamerLibrary | private |
| random_tempname(std::string const &same_dir_as, std::string const &prefix) const | core::pack::dunbrack::RotamerLibrary | private |
| read_from_binary(utility::io::izstream &in) | core::pack::dunbrack::RotamerLibrary | private |
| Residue typedef | core::pack::dunbrack::RotamerLibrary | |
| ResidueType typedef | core::pack::dunbrack::RotamerLibrary | |
| rotamer_energy(Residue const &rsd, pose::Pose const &pose, RotamerLibraryScratchSpace &scratch) const | core::pack::dunbrack::RotamerLibrary | |
| rotamer_energy_deriv(Residue const &rsd, pose::Pose const &pose, RotamerLibraryScratchSpace &scratch) const | core::pack::dunbrack::RotamerLibrary | |
| RotamerLibrary(utility::options::OptionCollection const &options) | core::pack::dunbrack::RotamerLibrary | |
| RotamerLibrary() | core::pack::dunbrack::RotamerLibrary | private |
| RotamerLibrary(RotamerLibrary const &) | core::pack::dunbrack::RotamerLibrary | private |
| shap_dun10_dir_ | core::pack::dunbrack::RotamerLibrary | private |
| shap_dun10_enable_ | core::pack::dunbrack::RotamerLibrary | private |
| shap_dun10_smooth_level_ | core::pack::dunbrack::RotamerLibrary | private |
| shapovalov_lib_fixes_enable_ | core::pack::dunbrack::RotamerLibrary | private |
| use_bicubic_ | core::pack::dunbrack::RotamerLibrary | private |
| utility::SingletonBase< RotamerLibrary > class | core::pack::dunbrack::RotamerLibrary | friend |
| validate_dunbrack_binary() | core::pack::dunbrack::RotamerLibrary | |
| write_binary_fa_dunbrack_libraries() const | core::pack::dunbrack::RotamerLibrary | private |
| write_binary_fa_dunbrack_libraries_02() const | core::pack::dunbrack::RotamerLibrary | private |
| write_binary_fa_dunbrack_libraries_10() const | core::pack::dunbrack::RotamerLibrary | private |
| write_to_binary(utility::io::ozstream &out) const | core::pack::dunbrack::RotamerLibrary | private |
| ~RotamerLibrary() | core::pack::dunbrack::RotamerLibrary | virtual |
1.8.7