protocols::enzdes::SetCatalyticResPackBehavior Class Reference

queries the pose cst cache for the catalytic residues, and sets the behavior for them as specified in the cstfile More...

#include <EnzdesTaskOperations.hh>

Inheritance diagram for protocols::enzdes::SetCatalyticResPackBehavior:

Public Types
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef core::pose::Pose	Pose
typedef core::pack::task::PackerTask	PackerTask
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	SetCatalyticResPackBehavior ()
	~SetCatalyticResPackBehavior () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (Pose const &pose, PackerTask &task) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
void	set_fix_catalytic_aa (bool setting)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
bool	fix_catalytic_aa_
std::string	behavior_non_catalytic_

Detailed Description

queries the pose cst cache for the catalytic residues, and sets the behavior for them as specified in the cstfile

Member Typedef Documentation

typedef core::pack::task::PackerTask protocols::enzdes::SetCatalyticResPackBehavior::PackerTask

typedef core::pose::Pose protocols::enzdes::SetCatalyticResPackBehavior::Pose

typedef core::pack::task::operation::TaskOperationOP protocols::enzdes::SetCatalyticResPackBehavior::TaskOperationOP

Constructor & Destructor Documentation

protocols::enzdes::SetCatalyticResPackBehavior::SetCatalyticResPackBehavior

(

)

Referenced by clone().

protocols::enzdes::SetCatalyticResPackBehavior::~SetCatalyticResPackBehavior ( )

overridedefault

Member Function Documentation

void protocols::enzdes::SetCatalyticResPackBehavior::apply ( Pose const &  pose, PackerTask &  task  ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::chemical::aa_from_name(), behavior_non_catalytic_, core::pack::task::create_command_map(), fix_catalytic_aa_, protocols::toolbox::match_enzdes_util::get_enzdes_observer(), core::chemical::ResidueTypeBase::is_protein(), core::chemical::ResidueType::nchi(), core::pack::task::PackerTask::nonconst_residue_task(), core::chemical::num_canonical_aas, core::pack::task::ResidueLevelTask::or_ex1(), core::pack::task::ResidueLevelTask::or_ex1_sample_level(), core::pack::task::ResidueLevelTask::or_ex2(), core::pack::task::ResidueLevelTask::or_ex2_sample_level(), core::pack::task::ResidueLevelTask::or_ex3(), core::pack::task::ResidueLevelTask::or_ex3_sample_level(), core::pack::task::ResidueLevelTask::or_ex4(), core::pack::task::ResidueLevelTask::or_ex4_sample_level(), core::pack::task::ResidueLevelTask::prevent_repacking(), core::pose::Pose::residue_type(), core::pack::task::ResidueLevelTask::restrict_absent_canonical_aas(), core::pack::task::ResidueLevelTask::restrict_to_repacking(), core::pose::Pose::size(), core::id::to_string(), and protocols::enzdes::tr().

core::pack::task::operation::TaskOperationOP protocols::enzdes::SetCatalyticResPackBehavior::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

References behavior_non_catalytic_, fix_catalytic_aa_, and SetCatalyticResPackBehavior().

static std::string protocols::enzdes::SetCatalyticResPackBehavior::keyname ( )

inlinestatic

Referenced by protocols::enzdes::SetCatalyticResPackBehaviorCreator::keyname(), and provide_xml_schema().

void protocols::enzdes::SetCatalyticResPackBehavior::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References behavior_non_catalytic_, and fix_catalytic_aa_.

void protocols::enzdes::SetCatalyticResPackBehavior::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::enzdes::SetCatalyticResPackBehaviorCreator::provide_xml_schema().

void protocols::enzdes::SetCatalyticResPackBehavior::set_fix_catalytic_aa ( bool  setting )

inline

References fix_catalytic_aa_.

Member Data Documentation

std::string protocols::enzdes::SetCatalyticResPackBehavior::behavior_non_catalytic_

private

Referenced by apply(), clone(), and parse_tag().

bool protocols::enzdes::SetCatalyticResPackBehavior::fix_catalytic_aa_

private

Referenced by apply(), clone(), parse_tag(), and set_fix_catalytic_aa().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/EnzdesTaskOperations.hh
• src/protocols/enzdes/EnzdesTaskOperations.cc