#include <FadeFunc.hh>

Inheritance diagram for core::scoring::func::FadeFunc:

Public Member Functions
	FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone, Real const well_depth, Real const well_offset)

	FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone, Real const well_depth)

	FadeFunc (Real const cutoff_lower, Real const cutoff_upper, Real const fade_zone)

FuncOP	clone () const override
	This method must return a deep copy of this Func, meaning if this Func holds pointers to other Func objects, that it must clone those Func objects as well. More...

bool	operator== (Func const &other) const override
	Equality operator. Looks for strict equality. Floating-point comparison is the rule rather than the exception. More...

bool	same_type_as_me (Func const &other) const override
	Does the input Func, "other", have the same type as me? Necessary for the equality operator to function correctly. All derived Func classes must implement this function. More...

Real	func (Real const x) const override
	Returns a value representing this function evaluated at a given point. More...

Real	dfunc (Real const x) const override
	Returns a value representing the derivative of this function evaluated at a given point. More...

void	read_data (std::istream &in) override
	initialize this Func from the given std::istream. More...

void	show_definition (std::ostream &out) const override
	shows the definition of this function, usually the string type of function and the parameters passed in to the constructor. More...

Real	cutoff_upper () const

Real	cutoff_lower () const

Real	fade_zone () const

void	cutoff_upper (Real x)

void	cutoff_lower (Real x)

void	fade_zone (Real x)

Size	show_violations (std::ostream &out, Real x, Size verbose_level, core::Real threshold=1) const override
	show some sort of stringified representation of the violations for this constraint. More...

Public Member Functions inherited from core::scoring::func::Func
	~Func () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

bool	operator!= (Func const &other) const
	inequality operator – simply the negation of the (virtual) equality operator More...

virtual Real	estimate_dfunc (Real const r) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More...

virtual Real	estimate_dfunc (Real const r, Real const h) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More...

virtual void	show (std::ostream &out) const
	Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More...

Private Attributes
Real	cutoff_lower_

Real	cutoff_upper_

Real	fade_zone_

Real	well_depth_

Real	well_offset_

Constructor & Destructor Documentation

core::scoring::func::FadeFunc::FadeFunc	(	Real const	cutoff_lower,
		Real const	cutoff_upper,
		Real const	fade_zone,
		Real const	well_depth,
		Real const	well_offset
	)

inline

core::scoring::func::FadeFunc::FadeFunc	(	Real const	cutoff_lower,
		Real const	cutoff_upper,
		Real const	fade_zone,
		Real const	well_depth
	)

inline

core::scoring::func::FadeFunc::FadeFunc	(	Real const	cutoff_lower,
		Real const	cutoff_upper,
		Real const	fade_zone
	)

inline

Member Function Documentation

FuncOP core::scoring::func::FadeFunc::clone ( ) const

overridevirtual

This method must return a deep copy of this Func, meaning if this Func holds pointers to other Func objects, that it must clone those Func objects as well.

Implements core::scoring::func::Func.

References cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

Real core::scoring::func::FadeFunc::cutoff_lower ( ) const

inline

References cutoff_lower_.

void core::scoring::func::FadeFunc::cutoff_lower ( Real x )

inline

References cutoff_lower_.

Real core::scoring::func::FadeFunc::cutoff_upper ( ) const

inline

References cutoff_upper_.

void core::scoring::func::FadeFunc::cutoff_upper ( Real x )

inline

References cutoff_upper_.

Real core::scoring::func::FadeFunc::dfunc ( Real const const ) const

overridevirtual

Returns a value representing the derivative of this function evaluated at a given point.

Implements core::scoring::func::Func.

References protocols::match::upstream::b, cutoff_lower_, cutoff_upper_, fade_zone_, and well_depth_.

Real core::scoring::func::FadeFunc::fade_zone ( ) const

inline

References fade_zone_.

void core::scoring::func::FadeFunc::fade_zone ( Real x )

inline

References fade_zone_.

Real core::scoring::func::FadeFunc::func ( Real const const ) const

overridevirtual

Returns a value representing this function evaluated at a given point.

Implements core::scoring::func::Func.

References protocols::match::upstream::b, cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

bool core::scoring::func::FadeFunc::operator== ( Func const & other ) const

overridevirtual

Equality operator. Looks for strict equality. Floating-point comparison is the rule rather than the exception.

Implements core::scoring::func::Func.

References cutoff_lower_, cutoff_upper_, fade_zone_, core::scoring::func::Func::same_type_as_me(), same_type_as_me(), well_depth_, and well_offset_.

void core::scoring::func::FadeFunc::read_data ( std::istream & )

overridevirtual

initialize this Func from the given std::istream.

Reimplemented from core::scoring::func::Func.

References core::pack::dunbrack::c, cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.

bool core::scoring::func::FadeFunc::same_type_as_me ( Func const & other ) const

overridevirtual

Does the input Func, "other", have the same type as me? Necessary for the equality operator to function correctly. All derived Func classes must implement this function.

Implements core::scoring::func::Func.

Referenced by operator==().

void core::scoring::func::FadeFunc::show_definition ( std::ostream & out ) const

overridevirtual

shows the definition of this function, usually the string type of function and the parameters passed in to the constructor.

Reimplemented from core::scoring::func::Func.

References cutoff_lower_, cutoff_upper_, fade_zone_, well_depth_, and well_offset_.