protocols::fldsgn::filters::CoreDunbrackFilter Class Reference

#include <CoreDunbrackFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::CoreDunbrackFilter:

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef std::string	String
typedef core::scoring::ScoreFunction	ScoreFunction
typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap

Public Member Functions
	CoreDunbrackFilter ()
	CoreDunbrackFilter (String const &type, Real const value)
	CoreDunbrackFilter (CoreDunbrackFilter const &rval)
	~CoreDunbrackFilter () override
FilterOP	clone () const override
FilterOP	fresh_instance () const override
void	filter_value (Real const &ss)
void	filter_type (String const &ss)
void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
	parse xml More...
bool	apply (Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
Real	report_sm (Pose const &pose) const override
	used to report filter internals through a score or silent file More...
void	report (std::ostream &out, Pose const &pose) const override
	used to report score More...
Real	compute (Pose const &pose) const
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
Real	filter_value_
String	type_
Real	fa_dun_danger_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::fldsgn::filters::CoreDunbrackFilter::DataMap

typedef protocols::filters::Filter protocols::fldsgn::filters::CoreDunbrackFilter::Filter

typedef protocols::filters::FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::FilterOP

typedef core::pose::Pose protocols::fldsgn::filters::CoreDunbrackFilter::Pose

typedef core::Real protocols::fldsgn::filters::CoreDunbrackFilter::Real

typedef core::scoring::ScoreFunction protocols::fldsgn::filters::CoreDunbrackFilter::ScoreFunction

typedef core::scoring::ScoreFunctionOP protocols::fldsgn::filters::CoreDunbrackFilter::ScoreFunctionOP

typedef std::string protocols::fldsgn::filters::CoreDunbrackFilter::String

typedef protocols::filters::Filter protocols::fldsgn::filters::CoreDunbrackFilter::Super

typedef utility::tag::TagCOP protocols::fldsgn::filters::CoreDunbrackFilter::TagCOP

Constructor & Destructor Documentation

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter

(

)

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter	(	String const &	type,
		Real const	value
	)

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter ( CoreDunbrackFilter const &  rval )

default

protocols::fldsgn::filters::CoreDunbrackFilter::~CoreDunbrackFilter ( )

inlineoverride

Member Function Documentation

bool protocols::fldsgn::filters::CoreDunbrackFilter::apply ( Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filter_value_, core::pose::Pose::size(), tr(), and type_.

std::string protocols::fldsgn::filters::CoreDunbrackFilter::class_name ( )

static

Referenced by protocols::fldsgn::filters::CoreDunbrackFilterCreator::keyname(), name(), and provide_xml_schema().

FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

CoreDunbrackFilter::Real protocols::fldsgn::filters::CoreDunbrackFilter::compute

(

Pose const &

pose

)

const

References core::pose::Pose::aa(), core::scoring::calc_per_atom_sasa(), core::pose::Pose::energies(), core::scoring::fa_dun, fa_dun_danger_, core::scoring::get_score_function(), core::pose::initialize_atomid_map(), core::chemical::name_from_aa(), core::scoring::Energies::residue_total_energies(), core::id::AtomID_Map< T >::set(), core::pose::Pose::size(), tr(), and type_.

Referenced by apply(), report(), and report_sm().

void protocols::fldsgn::filters::CoreDunbrackFilter::filter_type

(

String const &

ss

)

References type_.

void protocols::fldsgn::filters::CoreDunbrackFilter::filter_value

(

Real const &

ss

)

References filter_value_.

FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

std::string protocols::fldsgn::filters::CoreDunbrackFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::fldsgn::filters::CoreDunbrackFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &    )

overridevirtual

parse xml

Reimplemented from protocols::filters::Filter.

References filter_value_, tr(), and type_.

void protocols::fldsgn::filters::CoreDunbrackFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::fldsgn::filters::CoreDunbrackFilterCreator::provide_xml_schema().

void protocols::fldsgn::filters::CoreDunbrackFilter::report ( std::ostream &  out, Pose const &  pose  ) const

overridevirtual

used to report score

Reimplemented from protocols::filters::Filter.

References compute().

CoreDunbrackFilter::Real protocols::fldsgn::filters::CoreDunbrackFilter::report_sm ( Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

Real protocols::fldsgn::filters::CoreDunbrackFilter::fa_dun_danger_

private

Referenced by compute().

Real protocols::fldsgn::filters::CoreDunbrackFilter::filter_value_

private

Referenced by apply(), filter_value(), and parse_my_tag().

String protocols::fldsgn::filters::CoreDunbrackFilter::type_

private

Referenced by apply(), compute(), filter_type(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/filters/CoreDunbrackFilter.hh
• src/protocols/fldsgn/filters/CoreDunbrackFilter.cc